Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34322 | Canola | nucleus | 88.86 | 88.63 |
| AT4G24900.1 | Thale cress | nucleus | 64.25 | 58.91 |
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 48.96 | 45.22 |
| KRH54182 | Soybean | cytosol | 41.97 | 40.81 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 26.94 | 40.15 |
| Solyc03g098330.2.1 | Tomato | nucleus | 39.64 | 36.69 |
| PGSC0003DMT400065842 | Potato | nucleus | 39.12 | 36.47 |
| TraesCS5D01G294200.2 | Wheat | nucleus | 38.86 | 35.46 |
| TraesCS5A01G286600.1 | Wheat | nucleus | 38.86 | 35.29 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 38.08 | 33.72 |
| OQU89749 | Sorghum | nucleus | 27.72 | 33.54 |
| Zm00001d006090_P002 | Maize | nucleus | 37.31 | 33.03 |
| TraesCS5B01G285900.2 | Wheat | nucleus | 21.5 | 30.18 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 21.24 | 27.99 |
| Os09t0506900-01 | Rice | nucleus | 22.28 | 27.65 |
Protein Annotations
| EnsemblPlants:CDY03408 | EnsemblPlantsGene:GSBRNA2T00116054001 | InterPro:CCDC84 | PANTHER:PTHR31198 | PFAM:PF14968 | ProteinID:CDY03408 |
| ProteinID:CDY03408.1 | SEG:seg | UniParc:UPI0004EE3388 | MapMan:35.1 | : | : |
Description
BnaC01g16740D
Coordinates
chrLK031943:-:282997..285067
Molecular Weight (calculated)
44063.9 Da
IEP (calculated)
9.306
GRAVY (calculated)
-0.833
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKKTKAKK KPSKKSEFEL CKVCRFHHDQ GPRHKYFPRH KELLSAFLNR FRSKIADVRF FLKNPSFLRP QEESQNRLWC VFCDEDIVEL GSSFACSKAI
101: NHFASSEHHK NVKQFLWKHG PSMDCADDFK ISDADVAKWV RKCTALGNKD ASSCRGQLSS DIHNNKLEFE RTEKVQTHYI NPNDLNDVKP LLYNTNEYQI
201: SHSGVTHYGS HLNVDASHLP PGVIGMTSNS SSLYGDSTGN VHTGAPPPWL NPNGGNIYNQ SDITKVQEKL PAKTTSLLNP HRVGAAWAER RKIEMEMEKR
301: GLAVNSNTDA DWLPNFGRVW HSGTRKDSRK EFEKEKRRLV VTAESISMES EERKFVKTES ISVDSEEPVQ IQPYVSKRAR AMKSGE
101: NHFASSEHHK NVKQFLWKHG PSMDCADDFK ISDADVAKWV RKCTALGNKD ASSCRGQLSS DIHNNKLEFE RTEKVQTHYI NPNDLNDVKP LLYNTNEYQI
201: SHSGVTHYGS HLNVDASHLP PGVIGMTSNS SSLYGDSTGN VHTGAPPPWL NPNGGNIYNQ SDITKVQEKL PAKTTSLLNP HRVGAAWAER RKIEMEMEKR
301: GLAVNSNTDA DWLPNFGRVW HSGTRKDSRK EFEKEKRRLV VTAESISMES EERKFVKTES ISVDSEEPVQ IQPYVSKRAR AMKSGE
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.