Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34322 | Canola | nucleus | 60.81 | 66.15 |
| CDY03408 | Canola | nucleus | 58.91 | 64.25 |
| Bra013844.1-P | Field mustard | nucleus | 60.81 | 63.68 |
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 50.36 | 50.72 |
| KRH54182 | Soybean | cytosol | 40.86 | 43.32 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 25.89 | 42.08 |
| Solyc03g098330.2.1 | Tomato | nucleus | 40.86 | 41.25 |
| PGSC0003DMT400065842 | Potato | nucleus | 39.19 | 39.86 |
| TraesCS5D01G294200.2 | Wheat | nucleus | 39.67 | 39.48 |
| TraesCS5A01G286600.1 | Wheat | nucleus | 39.67 | 39.29 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 38.72 | 37.39 |
| Zm00001d006090_P002 | Maize | nucleus | 36.82 | 35.55 |
| TraesCS5B01G285900.2 | Wheat | nucleus | 23.04 | 35.27 |
| OQU89749 | Sorghum | nucleus | 25.89 | 34.17 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 21.85 | 31.4 |
| Os09t0506900-01 | Rice | nucleus | 23.04 | 31.19 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828592 | ProteinID:AEE84974.1 | ArrayExpress:AT4G24900 | EnsemblPlantsGene:AT4G24900 | RefSeq:AT4G24900 |
| TAIR:AT4G24900 | RefSeq:AT4G24900-TAIR-G | EnsemblPlants:AT4G24900.1 | TAIR:AT4G24900.1 | EMBL:AY099687 | EMBL:AY128869 |
| Unigene:At.44838 | ProteinID:CAB36732.1 | ProteinID:CAB79399.1 | InterPro:CCDC84 | UniProt:F4JRR5 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009960 |
| GO:GO:0046872 | RefSeq:NP_194220.2 | PFAM:PF14968 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | PO:PO:0025195 | PANTHER:PTHR31198 | UniParc:UPI000034F10F | SEG:seg | : |
Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
Coordinates
chr4:+:12814806..12817622
Molecular Weight (calculated)
47522.4 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.848
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQENYQVSQD KKQIDGSYNP PGVVGMTSIS SSHSTDAGGN VHSGAPPPWL
301: DANDGDFSSV QLNQSDVARF QAKVPGKNRK LNPNRVGAAW AERRKIEIEM EKSGHVTKSN IDPDWLPNFG RVWQSGTRKE SRKEFEKEKR KLVKTESIST
401: ESEPVKIQPY ISKRARRESG E
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQENYQVSQD KKQIDGSYNP PGVVGMTSIS SSHSTDAGGN VHSGAPPPWL
301: DANDGDFSSV QLNQSDVARF QAKVPGKNRK LNPNRVGAAW AERRKIEIEM EKSGHVTKSN IDPDWLPNFG RVWQSGTRKE SRKEFEKEKR KLVKTESIST
401: ESEPVKIQPY ISKRARRESG E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.