Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G286600.1 | Wheat | nucleus | 94.8 | 94.35 |
| TraesCS5B01G285900.2 | Wheat | nucleus | 60.52 | 93.09 |
| HORVU5Hr1G076330.27 | Barley | extracellular, nucleus | 91.73 | 88.99 |
| Os09t0506900-01 | Rice | nucleus | 49.17 | 66.88 |
| OQU89749 | Sorghum | nucleus | 45.39 | 60.19 |
| Zm00001d006090_P002 | Maize | nucleus | 61.7 | 59.86 |
| Zm00001d021054_P002 | Maize | mitochondrion, nucleus | 38.53 | 55.63 |
| GSMUA_Achr8P17850_001 | Banana | nucleus | 27.9 | 45.56 |
| VIT_17s0000g01350.t01 | Wine grape | nucleus | 42.32 | 42.82 |
| AT4G24900.1 | Thale cress | nucleus | 39.48 | 39.67 |
| CDY03408 | Canola | nucleus | 35.46 | 38.86 |
| CDY34322 | Canola | nucleus | 34.99 | 38.24 |
| Bra013844.1-P | Field mustard | nucleus | 34.52 | 36.32 |
| KRH54182 | Soybean | cytosol | 33.81 | 36.02 |
| Solyc03g098330.2.1 | Tomato | nucleus | 35.46 | 35.97 |
| PGSC0003DMT400065842 | Potato | nucleus | 34.99 | 35.75 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G294200.2 | EnsemblPlantsGene:TraesCS5D01G294200 | InterPro:CCDC84 | PANTHER:PTHR31198 | PFAM:PF14968 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:391048886..391053228
Molecular Weight (calculated)
45942.9 Da
IEP (calculated)
8.754
GRAVY (calculated)
-0.674
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPKPHAAGG GAYEYCELCR RNHDQGRRHR YFPAHRAALA AALSGFRAKL ADLRRALLRP STPGPRSRLW CPFCSADLVD LDSRFACSNA IYHLASEEHL
101: KGVKDFLRKH GGGMDQVDLF RISEDELAKW EKGCESSGTE AQALADGMIG PSLGPLKDIQ NESTSKISDS FAETDIPSFH NTASCVVMPL QSPTNGAYYP
201: TSTACYGSST SGSVAYSAPF GTSGLPVKPC VTTHGHQGMP STNMFHSADA QMKGAQSTSL GNGPNPPASS FVYVQQGHSG GKFNQGLKAN VHTGAPPPWL
301: EASEHDPKNV SLASYALPSS LKGKSRKLNP KRVGAAWAER RRAEMEMEKR GEAVPETPDA SWLPNFGGVW QSGSRKESRK EFEKNHKLKE ENNPELLTEI
401: KPYISKRMRV GSNKDGQPDS TVE
101: KGVKDFLRKH GGGMDQVDLF RISEDELAKW EKGCESSGTE AQALADGMIG PSLGPLKDIQ NESTSKISDS FAETDIPSFH NTASCVVMPL QSPTNGAYYP
201: TSTACYGSST SGSVAYSAPF GTSGLPVKPC VTTHGHQGMP STNMFHSADA QMKGAQSTSL GNGPNPPASS FVYVQQGHSG GKFNQGLKAN VHTGAPPPWL
301: EASEHDPKNV SLASYALPSS LKGKSRKLNP KRVGAAWAER RRAEMEMEKR GEAVPETPDA SWLPNFGGVW QSGSRKESRK EFEKNHKLKE ENNPELLTEI
401: KPYISKRMRV GSNKDGQPDS TVE
001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE
Arabidopsis Description
TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.