Factsheet for Bra013844.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003473.1-P
Bra010996.1-P
Bra012474.1-P
Bra014421.1-P
Bra024741.1-P
Bra035030.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24900.1	Bra010996.1-P	AT1G25490.1	21798944
AT4G24900.1	Bra012474.1-P	AT1G25490.1	21798944
AT4G24900.1	Bra024741.1-P	AT1G25490.1	21798944
AT4G24900.1	Bra035030.1-P	AT1G25490.1	21798944
AT4G24900.1	Bra039992.1-P	AT1G25490.1	21798944
AT4G24900.1	Bra003473.1-P	AT3G61790.1	21798944
AT4G24900.1	Bra014421.1-P	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34322	Canola	nucleus	91.54	95.09
AT4G24900.1	Thale cress	nucleus	63.68	60.81
VIT_17s0000g01350.t01	Wine grape	nucleus	47.76	45.93
KRH54182	Soybean	cytosol	41.29	41.81
GSMUA_Achr8P17850_001	Banana	nucleus	25.62	39.77
PGSC0003DMT400065842	Potato	nucleus	38.31	37.2
Solyc03g098330.2.1	Tomato	nucleus	38.56	37.17
TraesCS5A01G286600.1	Wheat	nucleus	36.57	34.59
TraesCS5D01G294200.2	Wheat	nucleus	36.32	34.52
OQU89749	Sorghum	nucleus	26.62	33.54
HORVU5Hr1G076330.27	Barley	extracellular, nucleus	35.82	33.03
Zm00001d006090_P002	Maize	nucleus	35.57	32.8
TraesCS5B01G285900.2	Wheat	nucleus	19.9	29.09
Zm00001d021054_P002	Maize	mitochondrion, nucleus	20.65	28.33
Os09t0506900-01	Rice	nucleus	20.65	26.69

Protein Annotations

EnsemblPlants:Bra013844.1	EnsemblPlants:Bra013844.1-P	EnsemblPlantsGene:Bra013844	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009960	InterPro:CCDC84	PANTHER:PTHR31198	PFAM:PF14968	SEG:seg
UniParc:UPI000254665E	UniProt:M4DBI4	MapMan:35.1	:	:	:

Description

AT4G24900 (E=1e-082) | unknown protein

Coordinates

chrA01:+:8042113..8043721

Molecular Weight (calculated)

46112.1 Da

IEP (calculated)

8.422

GRAVY (calculated)

-0.740

Length

402 amino acids

Sequence
(BLAST)

001: MEEKNTKAKK KPSKKNEFEF CKVCRFHHDH GPRHKYFPRH KELLSAFLNR FRSKIADVRF FLKNPSFLRP QEESQNRVWC VFCDEDIVEL GSSFACSKAI
101: NHFASSEHHK NIKQFLWKHG PSMDCVDDFK ISDADVAKWV RKCTALGNKD ASSCTGQLSR TSSDIHNKFE FERTEKVQTH FINPNNLNDV KPLLYNTNEY
201: QISHSGVTHY GSHLNVDASQ LAPGVIGMTS NSSSHSGDSS GNVHSGAPPP WLTPNDGNIF NQSEITRVQE KIPVKTTSKL NPHRVGAAWA ERRKIEMEME
301: KRGEAVNSNT DADWLPNFGR VWQSGTRKDS RKEFEKEKRK LVVTAESISM ESEEQKLVKT ESISVESEEP VQIQPYVSKR AVCFTFITLN CDDWFHVVHY
401: LF

Best Arabidopsis Sequence Match ( AT4G24900.2 )
(BLAST)

001: MKKPSKKSEI EFCTVCRFHH DQGSRHKYFP RHKSSLSSLL DRFRSKIADV RFFLKNPSVL RPQEQSQNRV WCVFCDEDIV ELGSSFACSK AINHFASSDH
101: LKNIKQFLSK NGPAMDCIDE FRISEADVAK WEKKCQSFGN EDASFEGSCG QLSGTSNDIH TKLAFETMDR IKKVPAHHIN SYKSNDVMPL QYNTNEYQIS
201: LSEIPGVIHN GSYLNMDDSQ FPLCDESGNG FGEHSIPCRS KDYSGNGNYC TQEVSQDKKQ IDGSYNPPGV VGMTSISSSH STDAGGNVHS GAPPPWLDAN
301: DGDFSSVQLN QSDVARFQAK VPGKNRKLNP NRVGAAWAER RKIEIEMEKS GHVTKSNIDP DWLPNFGRVW QSGTRKESRK EFEKEKRKLV KTESISTESE
401: PVKIQPYISK RARRESGE

Arabidopsis Description

TTLTITAN-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4JRR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.