Factsheet for Bra024741.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra003346.1-P
Bra006834.1-P
Bra007407.1-P
Bra008105.1-P
Bra014874.1-P
Bra015983.1-P
Bra020012.1-P
Bra024329.1-P
Bra026114.1-P
Bra028713.1-P
Bra032371.1-P
Bra033870.1-P
Bra035648.1-P
Bra037327.1-P
Bra037797.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25490.1	Bra026114.1-P	AT1G15730.1	21798944
AT1G25490.1	Bra014874.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra032371.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra033870.1-P	AT1G31870.1	21798944
AT1G25490.1	Bra008105.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra015983.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra039379.1-P	AT3G13222.1	21798944
AT1G25490.1	Bra003346.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra007407.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra020012.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra037327.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra028713.1-P	AT5G06960.1	21798944
AT1G25490.1	Bra002763.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra006834.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra035648.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra024329.1-P	AT5G64813.1	21798944
AT1G25490.1	Bra037797.1-P	AT5G64813.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039992.1-P	Field mustard	cytosol	37.69	93.23
Bra035030.1-P	Field mustard	cytosol	37.69	79.49
CDY42101	Canola	cytosol	99.09	55.35
AT1G25490.1	Thale cress	cytosol	94.83	53.06
Bra010996.1-P	Field mustard	cytosol	94.83	53.06
Bra012474.1-P	Field mustard	cytosol	91.79	51.54
Bra017348.1-P	Field mustard	cytosol	32.52	41.31
Bra025162.1-P	Field mustard	cytosol	48.33	20.65

Protein Annotations

EnsemblPlants:Bra024741.1	EnsemblPlants:Bra024741.1-P	EnsemblPlantsGene:Bra024741	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	PFAM:PF13646	PFscan:PS50077	SUPFAM:SSF48371	UniParc:UPI0002542731	UniProt:M4E7I6
MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:	:	:

Description

AT1G25490 (E=8e-176) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator

Coordinates

chrA09:+:23123381..23125097

Molecular Weight (calculated)

36425.7 Da

IEP (calculated)

5.063

GRAVY (calculated)

0.242

Length

329 amino acids

Sequence
(BLAST)

001: MVANQLYELC EAVGPDSTRT DLVPAYVGLL RDNEAEVRIA AAGKVTKFCQ LLNPELVIQH ILPCVKELST DSSQHVRSAL ASVIMGMAPI LGKDSTIEHL
101: LPIFLSLLKD EFPDVRLNII SKLDQVNQVI GIDLLSQSLL PAIVELAEDR HWRVRLAIIE YVPLLASPLG IGFFDDKLGA LCMQWLQDKV SSIREAAANN
201: LKRLAEEFGS EWAMQHIVPQ VLDMVTNPHY LHRMMVLRAI SLMAPVMGSE ITCSKFLPVV VEASKDRVPN VKFNVAKLLQ SLIPIVDQSV VEKTIRQCLV
301: DLSEDPDVDV RYFANQALRS IDGAAVAQS

Best Arabidopsis Sequence Match ( AT1G25490.1 )
(BLAST)

001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAEE LGVFIPFVGG IEFAHVLLPP LESLCTVEET
101: CVREKAVESL CKIGSQMKEN DLVESFVPLV KRLAGGEWFA ARVSACGIFH VAYQGCTDVL KTELRATYSQ LCKDDMPMVR RAAASNLGKF ATTVESTFLI
201: AEIMTMFDDL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRL LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAAANNL KRLAEEFGPE WAMQHLVPQV LDMVNNPHYL HRMMVLRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALNSI DGSTAAQS

Arabidopsis Description

PP2AA1Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38845]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.