Factsheet for Bra002763.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005403.1-P
Bra009166.1-P
Bra010996.1-P
Bra012474.1-P
Bra017216.1-P
Bra021925.1-P
Bra023087.1-P
Bra024741.1-P
Bra025359.1-P
Bra027824.1-P
Bra035030.1-P
Bra039042.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	Bra010996.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra012474.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra024741.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra035030.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra039992.1-P	AT1G25490.1	17889649
AT5G57090.1	Bra027824.1-P	AT1G59980.1	18047472
AT5G57090.1	Bra005403.1-P	AT2G34650.1	17889649
AT5G57090.1	Bra021925.1-P	AT2G34650.1	17889649
AT5G57090.1	Bra017216.1-P	AT2G36910.1	17237354
AT5G57090.1	Bra023087.1-P	AT2G36910.1	17237354
AT5G57090.1	Bra025359.1-P	AT3G28860.1	17237354
AT5G57090.1	Bra039042.1-P	AT3G28860.1	17237354
AT5G57090.1	Bra009166.1-P	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38263	Canola	plasma membrane	96.81	99.65
Bra006834.1-P	Field mustard	plasma membrane	78.49	72.74
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	77.98	71.72
Bra035648.1-P	Field mustard	plasma membrane	77.98	70.2
GSMUA_Achr1P15720_001	Banana	plasma membrane	58.32	67.64
KRH02749	Soybean	plasma membrane	71.09	66.41
KRH19119	Soybean	endoplasmic reticulum	71.09	65.89
VIT_11s0052g00440.t01	Wine grape	plasma membrane	69.58	65.71
Solyc07g006900.1.1	Tomato	plasma membrane	69.08	65.13
PGSC0003DMT400048251	Potato	plasma membrane	68.91	64.98
EER88769	Sorghum	plasma membrane	65.38	62.14
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	65.88	62.03
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	65.88	61.93
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	65.71	61.87
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	65.71	61.67
Os06t0660200-01	Rice	plasma membrane	64.37	60.79
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	64.87	60.69
Bra012358.1-P	Field mustard	golgi, plasma membrane	58.15	57.38
Bra008105.1-P	Field mustard	golgi, plasma membrane	59.16	57.14
Bra015983.1-P	Field mustard	plasma membrane	58.99	56.8
Bra016366.1-P	Field mustard	golgi, plasma membrane	53.28	54.28
Bra003938.1-P	Field mustard	golgi, plasma membrane	47.73	52.01
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	27.9	48.68
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	28.4	48.56
Bra016173.1-P	Field mustard	plasma membrane	51.26	48.26
Bra015694.1-P	Field mustard	plasma membrane	46.39	48.08
Bra026669.1-P	Field mustard	golgi, plasma membrane	56.81	42.41
Bra023503.1-P	Field mustard	golgi, plasma membrane	24.2	24.12

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra002763	EnsemblPlants:Bra002763.1	EnsemblPlants:Bra002763.1-P
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0010315	GO:GO:0010329
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4CEY1	InterPro:Mem_trans	PFAM:PF03547
InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI0002544DC0
SEG:seg	:	:	:	:	:

Description

AT1G73590 (E=5e-169) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter

Coordinates

chrA10:+:7747423..7751112

Molecular Weight (calculated)

64301.2 Da

IEP (calculated)

9.757

GRAVY (calculated)

0.159

Length

595 amino acids

Sequence
(BLAST)

001: MITGKDIYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMDYQ FLAADSLQKV ALSRRGSLDW TITLFSLSTL
101: PNTLVMGIPL LRAMYGDYSS NLMVQIVVLQ SIIWYTLMLF LFEYRGAKLL ISEQFPKTAG SITSFRVDSD VISLTSHDSL ETDEEIGVDG KLHVVVRRSN
201: AASSMISFNK SPGGGINSSM NTPRASNLSD VEIYSVSFNQ TDFYNMFNAS KSPSRRHGYS KSYGGAGSGR GGDVYSLQSS IGVAPRASSF NEEVFKTKKG
301: GRSMSVPYPP PNPMFTGSMS GASGVKKNEI GGGGGQNKEM DMCVWSSSAS PVSEAIARNA ITRGASTDSF IDLRASLPPN DNLASKAMKS LIQNKTPGRK
401: RHVEMDQEGK KGNDVEDGGV GGPTKQQMPP ASVMTRLILI MVWRKLIRNP NTYSSLFGLA WSLVSFKWNI KMPTIMSGSI SILSDAGLGM AMFSLGLFMA
501: LQPKIISCGK SVAVFAMAVR FLSGPAVIAA TSTAIGLRGN LLHIAIVQAA LPQGIVPFVF AKEYNVHPDI LSTAVIFGML VSLPVTVLYY VLLGI

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.