Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046893_P001 | Maize | golgi, plasma membrane, vacuole | 98.56 | 97.01 |
| Os06t0660200-01 | Rice | plasma membrane | 91.53 | 90.95 |
| TraesCS7D01G478800.1 | Wheat | golgi, plasma membrane, vacuole | 90.26 | 89.26 |
| TraesCS7B01G398100.1 | Wheat | golgi, plasma membrane, vacuole | 90.1 | 89.24 |
| TraesCS7A01G492400.1 | Wheat | golgi, plasma membrane, vacuole | 90.1 | 89.24 |
| HORVU7Hr1G110470.7 | Barley | golgi, plasma membrane, vacuole | 89.78 | 88.64 |
| GSMUA_Achr1P15720_001 | Banana | plasma membrane | 64.06 | 78.17 |
| CDY11886 | Canola | plasma membrane | 66.61 | 67.37 |
| CDY38263 | Canola | plasma membrane | 62.14 | 67.3 |
| KRH02749 | Soybean | plasma membrane | 68.05 | 66.88 |
| KRH19119 | Soybean | endoplasmic reticulum | 68.05 | 66.36 |
| CDY20694 | Canola | plasma membrane | 67.09 | 66.14 |
| CDY69709 | Canola | plasma membrane | 63.74 | 65.84 |
| PGSC0003DMT400048251 | Potato | plasma membrane | 66.13 | 65.61 |
| Bra002763.1-P | Field mustard | plasma membrane | 62.14 | 65.38 |
| Solyc07g006900.1.1 | Tomato | plasma membrane | 65.66 | 65.13 |
| AT5G57090.1 | Thale cress | golgi, plasma membrane, vacuole | 67.09 | 64.92 |
| CDX88606 | Canola | plasma membrane | 66.45 | 64.7 |
| Bra006834.1-P | Field mustard | plasma membrane | 66.29 | 64.64 |
| VIT_11s0052g00440.t01 | Wine grape | plasma membrane | 65.02 | 64.6 |
| CDY53978 | Canola | plasma membrane | 60.86 | 63.93 |
| Bra035648.1-P | Field mustard | plasma membrane | 67.25 | 63.69 |
| EES09211 | Sorghum | golgi, plasma membrane | 56.39 | 60.55 |
| EER88128 | Sorghum | golgi, plasma membrane | 57.19 | 59.08 |
| EES05538 | Sorghum | golgi, plasma membrane | 56.87 | 58.84 |
| EES01159 | Sorghum | golgi, plasma membrane | 54.63 | 52.37 |
| EER89254 | Sorghum | golgi, plasma membrane, vacuole | 50.16 | 52.33 |
| EES03524 | Sorghum | plasma membrane | 29.87 | 51.66 |
| KXG35972 | Sorghum | extracellular, plasma membrane, vacuole | 27.32 | 46.09 |
| KXG33996 | Sorghum | plasma membrane | 27.64 | 46.01 |
| EES03766 | Sorghum | golgi, plasma membrane, vacuole | 26.68 | 37.61 |
| OQU80833 | Sorghum | extracellular | 15.81 | 33.11 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | EntrezGene:8069375 | InterPro:Auxin_eff_plant | UniProt:C5Z7A0 | EnsemblPlants:EER88769 |
| ProteinID:EER88769 | ProteinID:EER88769.1 | GO:GO:0000323 | GO:GO:0001666 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009733 |
| GO:GO:0009734 | GO:GO:0009749 | GO:GO:0009921 | GO:GO:0009925 | GO:GO:0009926 | GO:GO:0009958 |
| GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0055085 | InterPro:Mem_trans | PFAM:PF03547 | InterPro:PIN2 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF4 |
| EnsemblPlantsGene:SORBI_3010G216700 | unigene:Sbi.8764 | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | UniParc:UPI0001A88ECC | RefSeq:XP_002437402.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:55998521..56003550
Molecular Weight (calculated)
66526.1 Da
IEP (calculated)
9.802
GRAVY (calculated)
0.277
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: MITGRDIYDV LAAIVPLYVA MFLAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SCDPYAMQYR FLAADSLQKL VILAALAVWH NVLSRYRRGA
101: AASSLDWTIT LFSLSTLPNT LVMGIPLLRA MYGDFSGNLM VQIVVLQSVI WYTLMLFLFE YRGAKALISE QFPPDVGASI ASFRVDSDVV SLNGREALQA
201: DAEVGSDGRV HVVIRRSASA STTGGGHGGA RSGVGGYRPY GPSSAMTPRA SNLTGVEIYS LQTSREPTPR GSSFNQSDFY AMFNGSKMAS PLAQPGARAP
301: GLDEQVANKF ASGKGGDATA AYPAPNPGMM PPPRKKELGG SNSNSNKELH MFVWSSSASP VSEANLRNAV NHAASTDFAA VPPPPMPVDG ATPKGVSGTV
401: TPAKKPDPAA NGGDLEIEDG LKSPATGLAA KFPVSGSPYV APRKKGADAP GLEEAAHPMP PASVMTRLIL IMVWRKLIRN PNTYSSLIGL VWSLVSFRFN
501: IQMPSIIKGS ISILSDAGLG MAMFSLGLFM ALQPKIISCG KRVATFAMAV RFLTGPAVIA ATSIAIGLRG VLLHVAIVQA ALPQGIVPFV FAKEYNCHPQ
601: ILSTAVIFGM LIALPITILY YVLLGI
101: AASSLDWTIT LFSLSTLPNT LVMGIPLLRA MYGDFSGNLM VQIVVLQSVI WYTLMLFLFE YRGAKALISE QFPPDVGASI ASFRVDSDVV SLNGREALQA
201: DAEVGSDGRV HVVIRRSASA STTGGGHGGA RSGVGGYRPY GPSSAMTPRA SNLTGVEIYS LQTSREPTPR GSSFNQSDFY AMFNGSKMAS PLAQPGARAP
301: GLDEQVANKF ASGKGGDATA AYPAPNPGMM PPPRKKELGG SNSNSNKELH MFVWSSSASP VSEANLRNAV NHAASTDFAA VPPPPMPVDG ATPKGVSGTV
401: TPAKKPDPAA NGGDLEIEDG LKSPATGLAA KFPVSGSPYV APRKKGADAP GLEEAAHPMP PASVMTRLIL IMVWRKLIRN PNTYSSLIGL VWSLVSFRFN
501: IQMPSIIKGS ISILSDAGLG MAMFSLGLFM ALQPKIISCG KRVATFAMAV RFLTGPAVIA ATSIAIGLRG VLLHVAIVQA ALPQGIVPFV FAKEYNCHPQ
601: ILSTAVIFGM LIALPITILY YVLLGI
001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
Arabidopsis Description
PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.