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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70737
CDX79704
CDX84294
CDX84994
CDX84995
CDX86408
CDX87453
CDX98906
CDY00109
CDY03849
CDY17273
CDY20012
CDY24397
CDY24398
CDY24399
CDY30918
CDY31621
CDY35849
CDY36104
CDY42101
CDY43662
CDY45159
CDY46744
CDY51132
CDY60440
CDY65012
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G57090.1 CDX70737 AT1G25490.1 17889649
AT5G57090.1 CDX84994 AT1G25490.1 17889649
AT5G57090.1 CDX84995 AT1G25490.1 17889649
AT5G57090.1 CDX87453 AT1G25490.1 17889649
AT5G57090.1 CDY03849 AT1G25490.1 17889649
AT5G57090.1 CDY24397 AT1G25490.1 17889649
AT5G57090.1 CDY24398 AT1G25490.1 17889649
AT5G57090.1 CDY24399 AT1G25490.1 17889649
AT5G57090.1 CDY31621 AT1G25490.1 17889649
AT5G57090.1 CDY35849 AT1G25490.1 17889649
AT5G57090.1 CDY36104 AT1G25490.1 17889649
AT5G57090.1 CDY42101 AT1G25490.1 17889649
AT5G57090.1 CDY51132 AT1G25490.1 17889649
AT5G57090.1 CDY70440 AT1G25490.1 17889649
AT5G57090.1 CDY30918 AT1G59980.1 18047472
AT5G57090.1 CDY45159 AT1G59980.1 18047472
AT5G57090.1 CDX84294 AT2G34650.1 17889649
AT5G57090.1 CDY17273 AT2G34650.1 17889649
AT5G57090.1 CDY43662 AT2G34650.1 17889649
AT5G57090.1 CDX79704 AT2G36910.1 17237354
AT5G57090.1 CDY46744 AT2G36910.1 17237354
AT5G57090.1 CDX86408 AT3G28860.1 17237354
AT5G57090.1 CDY00109 AT3G28860.1 17237354
AT5G57090.1 CDY20012 AT3G28860.1 17237354
AT5G57090.1 CDY65012 AT3G28860.1 17237354
AT5G57090.1 CDX98906 AT5G06140.1 16936718
AT5G57090.1 CDY60440 AT5G06140.1 16936718
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69709 Canola plasma membrane 92.13 96.53
Bra035648.1-P Field mustard plasma membrane 99.53 95.61
CDY11886 Canola plasma membrane 90.55 92.89
CDX88606 Canola plasma membrane 91.34 90.2
AT5G57090.1 Thale cress golgi, plasma membrane, vacuole 91.18 89.49
CDY38263 Canola plasma membrane 70.71 77.68
KRH02749 Soybean plasma membrane 76.54 76.3
KRH19119 Soybean endoplasmic reticulum 76.54 75.7
CDY53978 Canola plasma membrane 71.02 75.67
GSMUA_Achr1P15720_001 Banana plasma membrane 60.0 74.27
VIT_11s0052g00440.t01 Wine grape plasma membrane 73.07 73.65
Solyc07g006900.1.1 Tomato plasma membrane 71.5 71.95
PGSC0003DMT400048251 Potato plasma membrane 71.34 71.79
EER88769 Sorghum plasma membrane 66.14 67.09
CDX82059 Canola golgi, plasma membrane 54.96 66.35
Os06t0660200-01 Rice plasma membrane 65.83 66.35
TraesCS7A01G492400.1 Wheat golgi, plasma membrane, vacuole 65.83 66.14
TraesCS7B01G398100.1 Wheat golgi, plasma membrane, vacuole 65.83 66.14
TraesCS7D01G478800.1 Wheat golgi, plasma membrane, vacuole 65.83 66.03
HORVU7Hr1G110470.7 Barley golgi, plasma membrane, vacuole 65.83 65.93
Zm00001d046893_P001 Maize golgi, plasma membrane, vacuole 65.83 65.72
CDX96484 Canola plasma membrane 54.8 65.05
CDY40380 Canola plasma membrane 56.06 63.35
CDY63826 Canola plasma membrane 55.75 62.88
CDY47745 Canola golgi, plasma membrane 56.54 62.54
CDY23471 Canola golgi, plasma membrane 48.5 62.47
CDY12491 Canola plasma membrane 56.06 62.02
CDY25767 Canola plasma membrane 55.91 61.95
CDX68327 Canola plasma membrane 47.24 61.86
CDY68262 Canola plasma membrane 56.54 61.47
CDX96288 Canola golgi, plasma membrane 56.38 61.41
CDX91695 Canola plasma membrane 52.44 58.32
CDY41467 Canola plasma membrane 52.44 57.02
CDY72296 Canola golgi, plasma membrane 40.16 56.29
CDY09501 Canola plasma membrane 48.03 54.08
CDX69445 Canola golgi, plasma membrane, vacuole 26.93 49.14
CDY67254 Canola golgi, plasma membrane, vacuole 26.93 49.14
CDX88341 Canola plasma membrane 43.78 49.03
CDX87543 Canola plasma membrane 43.62 48.85
CDX70699 Canola golgi, plasma membrane, vacuole 26.61 48.56
CDX69551 Canola endoplasmic reticulum, extracellular, vacuole 16.06 45.54
CDY63766 Canola golgi, plasma membrane 20.94 44.78
CDX85565 Canola plasma membrane 25.51 44.75
CDX78697 Canola plasma membrane 26.93 43.4
CDY66594 Canola plasma membrane 27.4 38.75
CDX85566 Canola cytosol 2.52 5.8
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1GO:A0A078G5P9UniProt:A0A078G5P9InterPro:Auxin_eff_plantEnsemblPlants:CDY20694
ProteinID:CDY20694ProteinID:CDY20694.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009719GO:GO:0009734GO:GO:0009987
GO:GO:0010315GO:GO:0010329GO:GO:0016020GO:GO:0016021GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00012885001
InterPro:Mem_transPFAM:PF03547InterPro:PIN2PANTHER:PTHR31752PANTHER:PTHR31752:SF4TIGRFAMs:TIGR00946
TMHMM:TMhelixUniParc:UPI0004EE6A61SEG:seg:::
Description
BnaA02g08340DAuxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A078G5P9]
Coordinates
chrLK032111:-:20218..23961
Molecular Weight (calculated)
68390.1 Da
IEP (calculated)
9.773
GRAVY (calculated)
0.140
Length
635 amino acids
Sequence
(BLAST)
001: MITGKDMYDV LAAMVPLYVA MMLAYGSVRW WGIFTPSQCS GINRFVAIFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ ANVDVYYGDY
101: FQAFSRRGSL EWMITLFSLS TLPNTLVMGI PLLRAMYGDF SGNLMVQVVV LQSIIWYTLM LFMFEFRGAK LLISEQFPET AGSITSFRVD SDVVSLNGRE
201: PLQTDAEIGD DGKLHVVVRR SSAASSMISS FNKSHGGGLN SSMITPRASN LTGVEIYSVQ SSRGPTPRAS SFNQTDFYAM FNASKAPSPH VYSLQSSKGV
301: TPRTSNFDEE VLKAKKGARG GKNIIPSYPP PNPMFTGSTS GASGVKKKES GGGGGGGGGG QNKEMNMFVW SSSASPVSEA NARNAMTRGA SVDLSTDPKA
401: SLPPQENLAY KAMHSLIENM TPGRKGHVEM DQDGNNEGKS GVNSSPYNGK KGSDVEDGGP GGPRKQQMPP ASVMTRLILI MVWRKLIRNP NTYSSLFGLA
501: WSLVSYKWNI KMPTIVSGSI AILSDAGLGM AMFSLGLFMA LQPKIIACGK SVAVFAMAVR FLTGPAVIAA TSIAIGLRGN LLHIAIVQAA LPQGIVPFVF
601: AKEYNVHPDI LSTAVIFGML VALPVTVLYY VLLGI
Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)
001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
Arabidopsis Description
PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.