CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88606
CDY11886
CDY20694
CDY38263
CDY53978
CDY69709

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	CDX88606	AT5G57090.1	18047472
AT1G59980.1	CDY11886	AT5G57090.1	18047472
AT1G59980.1	CDY20694	AT5G57090.1	18047472
AT1G59980.1	CDY38263	AT5G57090.1	18047472
AT1G59980.1	CDY53978	AT5G57090.1	18047472
AT1G59980.1	CDY69709	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45159	Canola	cytosol	98.54	98.31
Bra027824.1-P	Field mustard	nucleus	97.82	97.34
AT1G59980.1	Thale cress	nucleus	89.81	89.37
CDY24259	Canola	cytosol	8.01	67.35
CDY65889	Canola	cytosol	14.56	65.93
CDY50519	Canola	nucleus	58.74	59.46
CDY16243	Canola	nucleus	62.38	58.81
CDY60793	Canola	nucleus	61.65	58.8
GSMUA_Achr3P06010_001	Banana	cytosol	58.5	57.38
HORVU6Hr1G076490.9	Barley	nucleus	57.52	53.74
TraesCS6D01G289600.1	Wheat	nucleus	57.77	53.6
TraesCS6A01G310200.1	Wheat	nucleus	57.77	53.6
TraesCS6B01G340100.1	Wheat	nucleus	57.28	53.15
Os02t0741100-01	Rice	nucleus	56.55	52.71
EER89501	Sorghum	cytosol	56.8	52.7
EES07283	Sorghum	nucleus	56.31	52.49
TraesCS7B01G100200.1	Wheat	cytosol	55.58	52.4
TraesCS7D01G196200.1	Wheat	cytosol	55.58	52.4
TraesCS7A01G194600.1	Wheat	cytosol	55.34	52.17
Zm00001d037257_P001	Maize	cytosol	53.64	52.12
Zm00001d017995_P003	Maize	nucleus	56.07	51.45
HORVU7Hr1G039640.19	Barley	cytosol	53.88	50.34
CDX96027	Canola	nucleus	50.0	50.24
CDY59029	Canola	nucleus	49.76	50.0
CDY50516	Canola	nucleus	41.99	49.15
CDY44905	Canola	nucleus	48.79	49.02
CDX81506	Canola	nucleus	48.79	47.86
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	58.5	47.07
CDY68909	Canola	nucleus	22.57	46.73
CDY71746	Canola	endoplasmic reticulum, extracellular	22.57	44.5
TraesCS7B01G498100.1	Wheat	cytosol	42.48	41.97
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	22.82	38.21
CDY71923	Canola	cytosol	8.98	34.91
CDY62617	Canola	extracellular	16.75	34.5
CDY37476	Canola	extracellular, plasma membrane	18.45	32.76
CDY27949	Canola	cytosol	9.22	31.15
CDY17195	Canola	cytosol	9.22	31.15
CDX78701	Canola	cytosol	9.22	30.16
CDX69435	Canola	cytosol	8.98	29.6
CDY49645	Canola	cytosol	8.98	29.6
CDX70703	Canola	cytosol	8.98	29.37
CDY53751	Canola	cytosol	9.22	24.2
CDY33230	Canola	endoplasmic reticulum, extracellular	8.74	20.22
CDX92921	Canola	extracellular, plasma membrane	7.28	14.85
CDY24260	Canola	plastid	8.74	14.34

Protein Annotations

EnsemblPlants:CDY30918	EnsemblPlantsGene:GSBRNA2T00046462001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ProteinID:CDY30918	ProteinID:CDY30918.1	ScanProsite:PS00636	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0004EDEEEC	UniProt:A0A078H237	MapMan:26.3.1.3	:	:

Description

BnaC09g14880DBnaC09g14880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H237]

Coordinates

chrLK032263:+:462888..465129

Molecular Weight (calculated)

46489.7 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.614

Length

412 amino acids

Sequence
(BLAST)

001: MPTHTSEKEV AGEDELRRNP YEVLGIPSNS TDQEIKSAYR RMALRYHPDK NPNDPVAADM FKEVTFAYDV LSDPENRRQY DTTASEAAGQ ENEDLELDLS
101: SLGAVNTMFA ALFNKLGVQI KTTVSANLLD EALNGTVTTL PLAVGQVVSR KVEKQSAHFY SVTLTEEESQ AGLICKVHSS AKNKFKLLYF DQEESGGLRL
201: ALQEDSRKTG KLSTAGLYFF GFPVYRFDPR VNSRALSRDP DTGFFKRLDT FQPLEITELK AGTHVFAVYG DNFFKSVSYT LEIFSSAPFA NEKATLRSTE
301: AQIVSKRTEL LKFESEYHDV FSQFTEMASK CAGEVQEIDE LLKRRNEICA AYTTFPPTKH SSSKSWGKGK SKKKSSLLME AREEGEVTVR EENGVKKKKW
401: YNIQLRQDKK KN

Best Arabidopsis Sequence Match ( AT1G59980.1 )
(BLAST)

001: MATHSSRSEN KDAGEEDELR RRNPYEVLGI PSNSTDQEIK SAYRRMALRY HPDKNPDDPV AAEMFKEVTF AYEVLSDPEN RRLYDTTGSE AVGPENEDLE
101: LDLSSLGAVN TIFAALFNKL GVQIKTTVSA NLLGEALNGT VTTLPLMVGQ VVSRKVEKQS AHFYSVTLTE EEAQDGLICK VHSSAKNKFK LLYFDQVENG
201: GLSLALQEDS RKTGKLSTAG LYFFGFPVYR FDHRVNSRAL SRDPETGFFK RLDAFQPFEI TELKAGSHVF AVYGDNFFKS VSYTLEIFSS APFGNEKESL
301: RSTEAQIVSK RTELLKFEAE YHEVFAQFTE MASKCTGEVQ EIDELLKRRN EICAAYTIFP PTKQGSSKSR SWSKKKSSLL MEPREEGEVA VREEGGVKKK
401: KWYNIQLRQD KKKN

Arabidopsis Description

ATJ39Chaperone protein dnaJ 39 [Source:UniProtKB/Swiss-Prot;Acc:Q6XL73]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.