CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71746	Canola	endoplasmic reticulum, extracellular	67.0	64.11
CDY37476	Canola	extracellular, plasma membrane	71.5	61.64
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	69.5	56.5
KRH65752	Soybean	cytosol	16.5	35.48
CDY50519	Canola	nucleus	45.5	22.36
CDY50516	Canola	nucleus	36.5	20.74
CDY24259	Canola	cytosol	5.0	20.41
CDY60793	Canola	nucleus	44.0	20.37
CDY16243	Canola	nucleus	44.0	20.14
CDY45159	Canola	cytosol	35.0	16.95
CDY30918	Canola	cytosol	34.5	16.75
CDY65889	Canola	cytosol	7.5	16.48
CDX96027	Canola	nucleus	33.5	16.34
CDY59029	Canola	nucleus	33.0	16.1
CDY44905	Canola	nucleus	33.0	16.1
CDX81506	Canola	nucleus	33.0	15.71
CDY49645	Canola	cytosol	7.0	11.2
CDX70703	Canola	cytosol	7.0	11.11
CDX78701	Canola	cytosol	7.0	11.11
KRH49472	Soybean	cytosol	15.5	10.8
CDY17195	Canola	cytosol	6.5	10.66
CDX69435	Canola	cytosol	6.5	10.4
CDY71923	Canola	cytosol	5.5	10.38
CDY53751	Canola	cytosol	8.0	10.19
CDY27949	Canola	cytosol	6.0	9.84
CDY33230	Canola	endoplasmic reticulum, extracellular	8.0	8.99
CDX92921	Canola	extracellular, plasma membrane	7.0	6.93
CDY24260	Canola	plastid	6.5	5.18
CDY68909	Canola	nucleus	0.0	0.0
GSMUA_Achr4P06780_001	Banana	cytosol	0.0	0.0
Os06t0237800-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY62617	EnsemblPlantsGene:GSBRNA2T00036458001	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	ProteinID:CDY62617	ProteinID:CDY62617.1
UniParc:UPI0004EE0CAC	UniProt:A0A078JDK2	MapMan:26.3.1.3	:	:	:

Description

BnaC08g46590DBnaC08g46590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDK2]

Coordinates

chrLK034170:+:11459..13613

Molecular Weight (calculated)

21956.5 Da

IEP (calculated)

9.670

GRAVY (calculated)

0.532

Length

200 amino acids

Sequence
(BLAST)

001: MIRSINSIIR AFILRTSGLW VGGSSAIPFS LICTIELAST IGAITTLDCI TGTVLIPSLD PQVSSVFRWL REKKTVMMKM MILCYCNGIR TRTFDISRRG
101: RKSVMMMTSL GAVNTVFAAL FSKLGVPMKT FVYATILEEA LNVRVSVDPL LLGQTVEKQC AHFYAVTITE VEIISGLVCR VESCSKSKFK VSSPESLPIA

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.