CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68909	Canola	nucleus	46.59	82.41
CDY24259	Canola	cytosol	10.51	75.51
CDY50519	Canola	nucleus	77.84	67.32
CDY60793	Canola	nucleus	76.99	62.73
CDY16243	Canola	nucleus	77.56	62.47
VIT_01s0026g00840.t01	Wine grape	cytosol	58.24	50.25
PGSC0003DMT400040316	Potato	nucleus	56.82	48.54
Solyc05g006240.2.1	Tomato	nucleus	57.39	48.44
KRH69469	Soybean	nucleus	56.82	48.43
KRH74687	Soybean	nucleus	56.25	48.29
CDY71746	Canola	endoplasmic reticulum, extracellular	27.56	46.41
CDY45159	Canola	cytosol	50.0	42.62
CDY30918	Canola	cytosol	49.15	41.99
CDY44905	Canola	nucleus	46.88	40.24
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	27.84	39.84
CDX96027	Canola	nucleus	46.31	39.76
CDY59029	Canola	nucleus	46.31	39.76
CDX81506	Canola	nucleus	46.88	39.29
CDY62617	Canola	extracellular	20.74	36.5
CDY65889	Canola	cytosol	8.81	34.07
CDY37476	Canola	extracellular, plasma membrane	21.59	32.76
CDY49645	Canola	cytosol	7.1	20.0
CDX69435	Canola	cytosol	7.1	20.0
CDX78701	Canola	cytosol	7.1	19.84
CDX70703	Canola	cytosol	7.1	19.84
CDY71923	Canola	cytosol	5.4	17.92
CDY53751	Canola	cytosol	7.67	17.2
CDY27949	Canola	cytosol	5.68	16.39
CDY17195	Canola	cytosol	5.68	16.39
CDX92921	Canola	extracellular, plasma membrane	7.95	13.86
CDY33230	Canola	endoplasmic reticulum, extracellular	6.53	12.92
CDY24260	Canola	plastid	7.95	11.16

Protein Annotations

EnsemblPlants:CDY50516	EnsemblPlantsGene:GSBRNA2T00096924001	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	ProteinID:CDY50516	ProteinID:CDY50516.1
SEG:seg	UniParc:UPI0004EF48E1	UniProt:A0A078IKK4	MapMan:26.3.1.3	:	:

Description

BnaAnng10450DBnaAnng10450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKK4]

Coordinates

chrLK032920:-:1277..3714

Molecular Weight (calculated)

39572.9 Da

IEP (calculated)

7.968

GRAVY (calculated)

-0.571

Length

352 amino acids

Sequence
(BLAST)

001: MQTKRLLNTP SHQQSLTTDR RPKRRIQSLQ KLATFSYNIL SDPNKRGNYD TAGFEAVDAE GQELELDLSS LGAVNTVFAA LSSKLGVPMK TSVSATILEE
101: ALNGRVSVDP LLLGQTVTKK EIRSGLVFRV ESSSKSKFKL LFFDQEADGG LSLAMQEDSR RSGKITCAGM YFLGFPVYSL DHTITSMSQE KDPETALFKS
201: LDGFHQCEVT ELKAGTHIFA VYGDNFFKSV SYTIQVLCAV TFTQEKEDLR SAQEMLLIDE LLKQRNEIHS AYTTAPLIER SSSKNRLRKS LFKKAVAEAP
301: ASIDREDEEE EGEESSRQRN KKPNTSDDES ETLKKKTRWY NLHLKLDKKK PC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.