CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024636.1-P	Field mustard	nucleus	99.07	99.07
CDY16243	Canola	nucleus	99.31	98.17
CDY24259	Canola	cytosol	10.42	91.84
AT1G24120.1	Thale cress	nucleus	91.2	90.37
CDY65889	Canola	cytosol	18.29	86.81
CDY50519	Canola	nucleus	80.32	85.26
CDY68909	Canola	nucleus	38.19	82.91
CDY50516	Canola	nucleus	62.73	76.99
VIT_01s0026g00840.t01	Wine grape	cytosol	71.53	75.74
KRH69469	Soybean	nucleus	69.68	72.88
KRH74687	Soybean	nucleus	68.52	72.2
PGSC0003DMT400040316	Potato	nucleus	68.75	72.09
Solyc05g006240.2.1	Tomato	nucleus	69.21	71.7
CDY45159	Canola	cytosol	59.95	62.71
CDY30918	Canola	cytosol	58.8	61.65
CDY71746	Canola	endoplasmic reticulum, extracellular	28.47	58.85
CDX96027	Canola	nucleus	55.09	58.05
CDY59029	Canola	nucleus	54.86	57.8
CDY44905	Canola	nucleus	54.4	57.32
CDX81506	Canola	nucleus	54.4	55.95
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	28.7	50.41
CDY62617	Canola	extracellular	20.37	44.0
CDY37476	Canola	extracellular, plasma membrane	22.69	42.24
CDX78701	Canola	cytosol	10.42	35.71
CDY49645	Canola	cytosol	10.19	35.2
CDX69435	Canola	cytosol	10.19	35.2
CDX70703	Canola	cytosol	10.19	34.92
CDY71923	Canola	cytosol	8.1	33.02
CDY17195	Canola	cytosol	8.33	29.51
CDY27949	Canola	cytosol	8.33	29.51
CDY53751	Canola	cytosol	10.19	28.03
CDY33230	Canola	endoplasmic reticulum, extracellular	9.72	23.6
CDX92921	Canola	extracellular, plasma membrane	7.87	16.83
CDY24260	Canola	plastid	9.26	15.94

Protein Annotations

EnsemblPlants:CDY60793	EnsemblPlantsGene:GSBRNA2T00030084001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:CDY60793	ProteinID:CDY60793.1	ScanProsite:PS00636	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EE27BC	UniProt:A0A078J7S4	MapMan:26.3.1.3	:

Description

BnaC05g50760DBnaC05g50760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7S4]

Coordinates

chrLK033916:+:7608..10424

Molecular Weight (calculated)

48831.6 Da

IEP (calculated)

7.093

GRAVY (calculated)

-0.635

Length

432 amino acids

Sequence
(BLAST)

001: MAANRSKSEK QLRRDPYEVL GVLKNSTDQE IKSAYRKLAL KYHPDKTAND PVAADMFKEV TFSYNILSDP EKRRQYDTAG FEAVEAEGQE LELDLSSLGA
101: VNTVFAALFS KLGVPIKTSV SATILEEALN GRVSVDPLLL GQAVTKKVEK QCAHFYAVTV TEEEVCSGLV CRVESSSKSK FKLLYFDQEA NSGLSLALQE
201: DSKRTGKITS AGMYFLGFPV YRLDHTNNSV AQAKDPETAF FKKLDGFQQC ELTELKAGTH VFAVYGDNFF KSVNYTIQVL CAASFTQEKE DLRSVEAQIL
301: TKRAELAKFE TEYREVLVQF TDMTSRYAQE MQSIDELLKQ RNEIHSAYTT APVIKRSSSK NRLNRLRRNS FKKAAAEAPA PTEQEEEEDE EEEEESSKER
401: NKKPSPSDKS ETLKKKSKWY KLHLKLDKKK PC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.