CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92921	Canola	extracellular, plasma membrane	41.04	50.99
CDY65889	Canola	cytosol	7.17	19.78
CDX69435	Canola	cytosol	9.16	18.4
CDY49645	Canola	cytosol	9.16	18.4
CDX70703	Canola	cytosol	9.16	18.25
CDX78701	Canola	cytosol	9.16	18.25
CDY71923	Canola	cytosol	7.17	16.98
CDY27949	Canola	cytosol	7.97	16.39
CDY17195	Canola	cytosol	7.97	16.39
CDY33230	Canola	endoplasmic reticulum, extracellular	9.96	14.04
CDY53751	Canola	cytosol	8.37	13.38
CDY24259	Canola	cytosol	2.39	12.24
CDY50519	Canola	nucleus	15.94	9.83
CDY60793	Canola	nucleus	15.94	9.26
CDY16243	Canola	nucleus	15.94	9.15
CDY30918	Canola	cytosol	14.34	8.74
CDY45159	Canola	cytosol	14.34	8.72
CDX96027	Canola	nucleus	13.94	8.54
CDY44905	Canola	nucleus	13.94	8.54
CDY59029	Canola	nucleus	13.94	8.54
CDX81506	Canola	nucleus	13.94	8.33
CDY50516	Canola	nucleus	11.16	7.95
CDY71746	Canola	endoplasmic reticulum, extracellular	6.37	7.66
CDY37476	Canola	extracellular, plasma membrane	6.77	7.33
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	6.77	6.91
CDY62617	Canola	extracellular	5.18	6.5
CDY68909	Canola	nucleus	4.78	6.03

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.1	GO:A0A078GCP7	UniProt:A0A078GCP7	InterPro:APO_dom	EnsemblPlants:CDY24260
ProteinID:CDY24260	ProteinID:CDY24260.1	InterPro:DnaJ_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00026403001	InterPro:IPR001623	InterPro:IPR023342	InterPro:IPR036869	InterPro:J_dom_sf
PFAM:PF00226	PFAM:PF05634	PANTHER:PTHR10388	PANTHER:PTHR10388:SF20	SUPFAM:SSF46565	UniParc:UPI0004EE5395
SEG:seg	:	:	:	:	:

Description

BnaC03g42330DBnaC03g42330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCP7]

Coordinates

chrLK032156:-:62728..65925

Molecular Weight (calculated)

28751.1 Da

IEP (calculated)

9.924

GRAVY (calculated)

-0.253

Length

251 amino acids

Sequence
(BLAST)

001: MYYTVYYVLF TGPAQHSNDS KKNRKQSKRL PNPVPLAKEV LKARRSLLTN VTLLLKVIPV LTCNIYRQEE HLIQTCCSYI RLGNNKLHER VPGSTYNVLV
101: PVGSSTYTMS QGVIRHQHWF DSHRVPSILE LCCQAGAIHP VEIHDNLQIS DEDDRNLKYV GTNALMAWEK FATAAIKLGY VMSANKSKSK KKDVEKQLRR
201: NPYEVLGLLK NFTDQEIKSA YRKLALKSHG CILVWFRLIL SLDVTFLCTN I

Best Arabidopsis Sequence Match ( AT3G21740.1 )
(BLAST)

001: MSNWRHKLWR KLSSFQRASY STTSSRNNKL KLDDLRKLRP MILKRIENRA KDYPVKEIVP VAEEILIARK NLISNIAALL KVFPVLTCKF CSEVFVGKEG
101: HLIETCRSYI RRGNNRLHEW VPGSINDILV PVESYHLHNI SQGVIRHQER FDYDRVPAIL ELCCQAGAIH PEEILQYSEI HDNPQISEED IRSLPAGDLK
201: YVGANALMAW EKVRAGVKKL LLVYPSKVCK RCKEVHVGPS GHKARLCGVF KYESWRGTHY WEKAGVNDLV PEKMVWHRRP QDPVVLVDEG RSYYGHAPAI
301: VSLCSHTGAI VPVKYACKMK PQGLSFSFTN PVPNLET

Arabidopsis Description

APO4APO protein 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LSZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.