CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	96.17	81.71
CDY37476	Canola	extracellular, plasma membrane	75.6	68.1
CDY62617	Canola	extracellular	64.11	67.0
KRH65752	Soybean	cytosol	22.01	49.46
CDY24259	Canola	cytosol	11.48	48.98
CDY50519	Canola	nucleus	58.85	30.22
CDY60793	Canola	nucleus	58.85	28.47
CDY16243	Canola	nucleus	58.85	28.15
CDY50516	Canola	nucleus	46.41	27.56
CDY45159	Canola	cytosol	44.98	22.76
CDY30918	Canola	cytosol	44.5	22.57
CDX96027	Canola	nucleus	44.02	22.44
CDY59029	Canola	nucleus	43.54	22.2
CDY44905	Canola	nucleus	43.06	21.95
CDX81506	Canola	nucleus	42.58	21.19
CDY65889	Canola	cytosol	8.13	18.68
CDY71923	Canola	cytosol	6.7	13.21
KRH49472	Soybean	cytosol	17.7	12.89
CDY49645	Canola	cytosol	7.18	12.0
CDX69435	Canola	cytosol	7.18	12.0
CDX70703	Canola	cytosol	7.18	11.9
CDX78701	Canola	cytosol	7.18	11.9
CDY27949	Canola	cytosol	6.7	11.48
CDY17195	Canola	cytosol	6.7	11.48
CDY53751	Canola	cytosol	8.13	10.83
CDX92921	Canola	extracellular, plasma membrane	9.09	9.41
CDY33230	Canola	endoplasmic reticulum, extracellular	7.18	8.43
CDY24260	Canola	plastid	7.66	6.37
Os06t0237800-01	Rice	cytosol, nucleus	1.44	1.86
CDY68909	Canola	nucleus	0.0	0.0
GSMUA_Achr4P06780_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY71746	EnsemblPlantsGene:GSBRNA2T00019976001	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	ProteinID:CDY71746	ProteinID:CDY71746.1
SEG:seg	UniParc:UPI0004EE8FFC	UniProt:A0A078K1X5	MapMan:26.3.1.3	:	:

Description

BnaCnng74240DBnaCnng74240D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K1X5]

Coordinates

chrLK047280:-:739..1968

Molecular Weight (calculated)

22337.8 Da

IEP (calculated)

4.056

GRAVY (calculated)

0.450

Length

209 amino acids

Sequence
(BLAST)

001: NHPFERLSVS AIVVGGSSAI PFSLVCTIEL ASTIGAITTL DCITGTVLIP SLDPQVSSVF QCVRPDVILA EGEEDSDDED DDTVDFAIEA EGQELELDLS
101: SLGAVNTVFA ALFSKLGVPM KIFVSATILE EALNGRVSVD PLLLGQTVTK KVEKQCAHFY AVTITEVEII SGLVCRVESC SKSKFKLLYF DQKANGGLSL
201: ALQVLFSFI

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.