CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96027	Canola	nucleus	99.51	99.51
AT1G68370.1	Thale cress	nucleus	94.63	94.63
CDY44905	Canola	nucleus	93.17	93.17
CDX81506	Canola	nucleus	92.44	90.24
KRH35922	Soybean	nucleus	83.66	83.66
KRG90857	Soybean	nucleus	83.17	83.17
VIT_01s0011g03790.t01	Wine grape	nucleus	83.17	82.17
PGSC0003DMT400037773	Potato	cytosol	82.44	81.84
Solyc05g009160.2.1	Tomato	nucleus	81.95	81.36
Solyc04g007370.2.1	Tomato	cytosol	81.71	80.92
PGSC0003DMT400015325	Potato	cytosol	71.22	79.78
TraesCS3A01G202200.1	Wheat	cytosol	77.8	78.19
TraesCS3D01G201400.2	Wheat	cytosol	77.56	77.94
Os01t0512100-01	Rice	plasma membrane	76.59	77.92
GSMUA_Achr8P31640_001	Banana	cytosol	77.07	77.45
EES16141	Sorghum	nucleus	77.07	77.45
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	76.34	76.9
HORVU3Hr1G042500.2	Barley	plastid	77.07	67.67
CDY24259	Canola	cytosol	7.8	65.31
CDY65889	Canola	cytosol	13.9	62.64
CDY50519	Canola	nucleus	55.12	55.53
CDY60793	Canola	nucleus	57.8	54.86
CDY16243	Canola	nucleus	58.05	54.46
CDY45159	Canola	cytosol	50.49	50.12
CDY30918	Canola	cytosol	50.0	49.76
CDY50516	Canola	nucleus	39.76	46.31
CDY71746	Canola	endoplasmic reticulum, extracellular	22.2	43.54
CDY68909	Canola	nucleus	20.73	42.71
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	21.95	36.59
CDY71923	Canola	cytosol	9.27	35.85
CDX78701	Canola	cytosol	10.49	34.13
CDX70703	Canola	cytosol	10.49	34.13
CDX69435	Canola	cytosol	10.24	33.6
CDY49645	Canola	cytosol	10.24	33.6
CDY62617	Canola	extracellular	16.1	33.0
CDY27949	Canola	cytosol	9.51	31.97
CDY17195	Canola	cytosol	9.51	31.97
CDY37476	Canola	extracellular, plasma membrane	17.32	30.6
CDY53751	Canola	cytosol	10.73	28.03
CDY33230	Canola	endoplasmic reticulum, extracellular	10.98	25.28
Os03t0262500-01	Rice	plasma membrane, plastid	7.07	15.51
CDX92921	Canola	extracellular, plasma membrane	7.56	15.35
CDY24260	Canola	plastid	8.54	13.94

Protein Annotations

EnsemblPlants:CDY59029	EnsemblPlantsGene:GSBRNA2T00025461001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ProteinID:CDY59029	ProteinID:CDY59029.1	ScanProsite:PS00636	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0004EB6041	UniProt:A0A078J0Z1	MapMan:26.3.1.3	:	:

Description

BnaCnng34140DBnaCnng34140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0Z1]

Coordinates

chrLK033719:-:1351..3805

Molecular Weight (calculated)

45349.1 Da

IEP (calculated)

6.119

GRAVY (calculated)

-0.586

Length

410 amino acids

Sequence
(BLAST)

001: MSSKKVEGSS APANRRDPYE VLCVARDASD QEIKSAYRKL ALKYHPDKNA NNPEASDLFK EVAFSYSILS DPEKRRQYDN AGFEALDADG MEMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEESEKTGKV TSAGMYFLHF QVYRMDSTVN ALAAAKDPES AFFKRLEGLQ PCEVSELRAG THIFAVYGDN FFKTASYTIE ALCAKTYEET TEKLKEIEAQ
301: ILRKRNDLRQ FETEYRKALA RFQEVTTRYT QEKQTVDELL KQRDSIHSSF SVVKTPSGNN LSNGSSSKAQ GDEPKGEGDS AGEEGGAESR DKSKRKWFNL
401: NIKGSDKKLG

Best Arabidopsis Sequence Match ( AT1G68370.1 )
(BLAST)

001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG

Arabidopsis Description

ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.