CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24260	Canola	plastid	50.99	41.04
CDX70703	Canola	cytosol	12.87	20.63
CDX78701	Canola	cytosol	12.87	20.63
CDX69435	Canola	cytosol	12.38	20.0
CDY49645	Canola	cytosol	12.38	20.0
CDY71923	Canola	cytosol	9.41	17.92
CDY27949	Canola	cytosol	9.9	16.39
CDY17195	Canola	cytosol	9.41	15.57
CDY53751	Canola	cytosol	11.88	15.29
CDY33230	Canola	endoplasmic reticulum, extracellular	13.37	15.17
CDY65889	Canola	cytosol	6.44	14.29
CDY24259	Canola	cytosol	2.97	12.24
CDY71746	Canola	endoplasmic reticulum, extracellular	9.41	9.09
CDY50519	Canola	nucleus	16.83	8.35
CDY37476	Canola	extracellular, plasma membrane	9.41	8.19
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	9.9	8.13
CDY50516	Canola	nucleus	13.86	7.95
CDY60793	Canola	nucleus	16.83	7.87
CDY16243	Canola	nucleus	16.83	7.78
CDX96027	Canola	nucleus	15.35	7.56
CDY59029	Canola	nucleus	15.35	7.56
CDY44905	Canola	nucleus	15.35	7.56
CDX81506	Canola	nucleus	15.35	7.38
CDY30918	Canola	cytosol	14.85	7.28
CDY45159	Canola	cytosol	14.85	7.26
CDY62617	Canola	extracellular	6.93	7.0
CDY68909	Canola	nucleus	3.47	3.52

Protein Annotations

EnsemblPlants:CDX92921	EnsemblPlantsGene:GSBRNA2T00154776001	GO:A0A078DUE2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:APO_dom	InterPro:IPR023342	PANTHER:PTHR10388	PANTHER:PTHR10388:SF20	PFAM:PF05634
ProteinID:CDX92921	ProteinID:CDX92921.1	UniParc:UPI0004EEFB32	MapMan:35.1	:	:

Description

BnaA03g36430D

Coordinates

chrLK031874:-:37632..39106

Molecular Weight (calculated)

22927.5 Da

IEP (calculated)

7.745

GRAVY (calculated)

-0.143

Length

202 amino acids

Sequence
(BLAST)

001: MTFLYVFYIP EIKILKPFRF CSEVFIGKEE HLIQTCCSYI RLENNKLHEW VPGSTYNVVV PVGSSTYLMS QGVIRHQHRF DSYRVPSILE LCCQAGAIHP
101: VEINDNQQIS DEDDRNLKYV GSNALMVWEK VRAGLKTLLL VYPSKVCNRR VNDGINYYGH ASAVASLCSH ASALVSNTTY ACEMKPRGLS FPFSNSSPYQ
201: ET

Best Arabidopsis Sequence Match ( AT3G21740.1 )
(BLAST)

001: MSNWRHKLWR KLSSFQRASY STTSSRNNKL KLDDLRKLRP MILKRIENRA KDYPVKEIVP VAEEILIARK NLISNIAALL KVFPVLTCKF CSEVFVGKEG
101: HLIETCRSYI RRGNNRLHEW VPGSINDILV PVESYHLHNI SQGVIRHQER FDYDRVPAIL ELCCQAGAIH PEEILQYSEI HDNPQISEED IRSLPAGDLK
201: YVGANALMAW EKVRAGVKKL LLVYPSKVCK RCKEVHVGPS GHKARLCGVF KYESWRGTHY WEKAGVNDLV PEKMVWHRRP QDPVVLVDEG RSYYGHAPAI
301: VSLCSHTGAI VPVKYACKMK PQGLSFSFTN PVPNLET

Arabidopsis Description

APO4APO protein 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LSZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.