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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, extracellular, vacuole

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • plasma membrane 1
  • extracellular 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion, plasma membrane, vacuole
Any Predictor:mitochondrion, plasma membrane, plastid, vacuole
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:extracellular
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71746 Canola endoplasmic reticulum, extracellular 81.71 96.17
CDY62617 Canola extracellular 56.5 69.5
CDY37476 Canola extracellular, plasma membrane 65.04 68.97
KRH65752 Soybean cytosol 19.11 50.54
CDY24259 Canola cytosol 9.35 46.94
CDY50519 Canola nucleus 50.0 30.22
CDY60793 Canola nucleus 50.41 28.7
CDY16243 Canola nucleus 50.41 28.38
CDY50516 Canola nucleus 39.84 27.84
CDY45159 Canola cytosol 38.62 23.0
CDY30918 Canola cytosol 38.21 22.82
CDX96027 Canola nucleus 36.99 22.2
CDY59029 Canola nucleus 36.59 21.95
CDY44905 Canola nucleus 36.59 21.95
CDX81506 Canola nucleus 36.18 21.19
CDY65889 Canola cytosol 7.32 19.78
KRH49472 Soybean cytosol 16.26 13.94
CDY49645 Canola cytosol 6.1 12.0
CDX69435 Canola cytosol 6.1 12.0
CDX70703 Canola cytosol 6.1 11.9
CDX78701 Canola cytosol 6.1 11.9
CDY27949 Canola cytosol 5.69 11.48
CDY17195 Canola cytosol 5.69 11.48
CDY71923 Canola cytosol 4.88 11.32
CDY53751 Canola cytosol 6.5 10.19
CDX92921 Canola extracellular, plasma membrane 8.13 9.9
CDY33230 Canola endoplasmic reticulum, extracellular 6.91 9.55
CDY24260 Canola plastid 6.91 6.77
Os06t0237800-01 Rice cytosol, nucleus 1.22 1.86
CDY68909 Canola nucleus 0.0 0.0
GSMUA_Achr4P06780_001 Banana cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDY34584EnsemblPlantsGene:GSBRNA2T00057024001PANTHER:PTHR44272PANTHER:PTHR44272:SF2ProteinID:CDY34584ProteinID:CDY34584.1
SEG:segUniParc:UPI0004EDB8B1UniProt:A0A078HAU7MapMan:26.3.1.3::
Description
BnaC03g56840DBnaC03g56840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAU7]
Coordinates
chrLK032337:-:301039..305004
Molecular Weight (calculated)
26725.2 Da
IEP (calculated)
4.458
GRAVY (calculated)
0.347
Length
246 amino acids
Sequence
(BLAST)
001: MQNEIADSLA RNARSFHRSL CFIGCSIPVW LPRPPQNHPF ERLSVSAIVV GGSSAIPFSL ICTIELASTI GAITTLDCIT GTVLIPSLDP QVSSVFRWCV
101: RPDVILAEGE EDSDDEDDDT VDFAVEAECQ KLELDLSSLG AVNTVFAALF SKLGVPMKTF VSATILEEAL NGRVYVDPLL LGQAVTKKVE KQCAHFYAVT
201: ITEVEIISGL VCRVESCSKS KFKLLYFDQK ANGGLSLALQ VLFSFI
Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)
001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC
Arabidopsis Description
ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.