CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68909	Canola	nucleus	40.05	81.91
CDY24259	Canola	cytosol	9.83	81.63
CDY60793	Canola	nucleus	85.26	80.32
CDY16243	Canola	nucleus	86.0	80.09
CDY65889	Canola	cytosol	17.44	78.02
CDY50516	Canola	nucleus	67.32	77.84
VIT_01s0026g00840.t01	Wine grape	cytosol	72.24	72.06
PGSC0003DMT400040316	Potato	nucleus	70.02	69.17
Solyc05g006240.2.1	Tomato	nucleus	70.52	68.82
KRH74687	Soybean	nucleus	69.04	68.54
KRH69469	Soybean	nucleus	69.53	68.52
CDY45159	Canola	cytosol	60.69	59.81
CDY71746	Canola	endoplasmic reticulum, extracellular	30.22	58.85
CDY30918	Canola	cytosol	59.46	58.74
CDY44905	Canola	nucleus	55.77	55.37
CDX96027	Canola	nucleus	55.77	55.37
CDY59029	Canola	nucleus	55.53	55.12
CDX81506	Canola	nucleus	55.28	53.57
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	30.22	50.0
CDY62617	Canola	extracellular	22.36	45.5
CDY37476	Canola	extracellular, plasma membrane	25.31	44.4
CDX78701	Canola	cytosol	11.06	35.71
CDX70703	Canola	cytosol	10.81	34.92
CDY49645	Canola	cytosol	10.57	34.4
CDX69435	Canola	cytosol	10.57	34.4
CDY71923	Canola	cytosol	8.6	33.02
CDY27949	Canola	cytosol	8.85	29.51
CDY17195	Canola	cytosol	8.85	29.51
CDY53751	Canola	cytosol	10.81	28.03
CDY33230	Canola	endoplasmic reticulum, extracellular	10.32	23.6
CDX92921	Canola	extracellular, plasma membrane	8.35	16.83
CDY24260	Canola	plastid	9.83	15.94

Protein Annotations

EnsemblPlants:CDY50519	EnsemblPlantsGene:GSBRNA2T00096930001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:CDY50519	ProteinID:CDY50519.1	ScanProsite:PS00636	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EE534E	UniProt:A0A078IMC8	MapMan:26.3.1.3	:

Description

BnaAnng10480DBnaAnng10480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMC8]

Coordinates

chrLK032920:-:25857..28043

Molecular Weight (calculated)

46374.3 Da

IEP (calculated)

9.292

GRAVY (calculated)

-0.558

Length

407 amino acids

Sequence
(BLAST)

001: MAGHRSKSEK HLRRDPYEVL GVLRNSTDQE IKSAYRKMAL KYHPDKTAND PVAADVFKEL TFSYNILSDP DKRHQYDTAG FEAVEAKGQE LELDLSSLGA
101: VNTVFAALFS KLGVPMKTSV SATILEEALN GRVSVDPLLL GQIVTKKVEK QCAHFYAVTI TEEEISSGLV FRVESSSKSK FKLLFFDQEA DGGLSLAMQE
201: DSRRSGKVTC AGMYFLGFPV YSLDHTITSM AQEKNPETAL FKSLDGFQQC EVTELKAGTH LFAVYGDNFF KSVSYTIQVH CAASFSQEKE DLRSVEAQIL
301: NKRAELAKFE TEYREVLVQF TDMTSRYAQE MQSIDELLKQ RNEIHSAYTT VPLVERSSSK NRLRKSLRRR RRRQRNKKPN TCDESETLKK KTRWYNLRLK
401: LDKKKPC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.