CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74687	Soybean	nucleus	96.37	97.07
VIT_01s0026g00840.t01	Wine grape	cytosol	80.87	81.86
CDY24259	Canola	cytosol	9.69	81.63
CDY65889	Canola	cytosol	17.68	80.22
PGSC0003DMT400040316	Potato	nucleus	78.93	79.13
Solyc05g006240.2.1	Tomato	nucleus	78.69	77.94
KRH65752	Soybean	cytosol	17.43	77.42
GSMUA_Achr3P06010_001	Banana	cytosol	72.4	71.19
AT1G24120.1	Thale cress	nucleus	74.58	70.64
CDY60793	Canola	nucleus	72.88	69.68
CDY16243	Canola	nucleus	73.61	69.57
CDY50519	Canola	nucleus	68.52	69.53
Bra024636.1-P	Field mustard	nucleus	72.64	69.44
HORVU6Hr1G076490.9	Barley	nucleus	69.01	64.63
TraesCS6B01G340100.1	Wheat	nucleus	69.25	64.41
EES07283	Sorghum	nucleus	68.77	64.25
TraesCS6D01G289600.1	Wheat	nucleus	69.01	64.19
Os02t0741100-01	Rice	nucleus	68.52	64.03
TraesCS6A01G310200.1	Wheat	nucleus	68.52	63.74
TraesCS7B01G100200.1	Wheat	cytosol	66.34	62.7
TraesCS7D01G196200.1	Wheat	cytosol	66.34	62.7
Zm00001d037257_P001	Maize	cytosol	64.16	62.5
TraesCS7A01G194600.1	Wheat	cytosol	65.86	62.24
EER89501	Sorghum	cytosol	66.83	62.16
Zm00001d017995_P003	Maize	nucleus	67.55	62.14
HORVU7Hr1G039640.19	Barley	cytosol	64.65	60.54
KRH35922	Soybean	nucleus	59.56	60.0
KRG90857	Soybean	nucleus	58.84	59.27
CDY50516	Canola	nucleus	48.43	56.82
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	69.25	55.86
CDY68909	Canola	nucleus	25.42	52.76
TraesCS7B01G498100.1	Wheat	cytosol	48.91	48.44
KRH49472	Soybean	cytosol	33.41	48.08
Bra016320.1-P	Field mustard	plastid	38.5	41.51
KRH23998	Soybean	cytosol	12.11	40.65
KRH29318	Soybean	cytosol	11.62	38.4
KRH16828	Soybean	cytosol	9.69	28.99
KRH72437	Soybean	mitochondrion	9.44	25.16

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100800929	MapMan:26.3.1.3	EMBL:ACUP02000716	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_02G029600	UniProt:I1JBX9	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EnsemblPlants:KRH69469	ProteinID:KRH69469	ProteinID:KRH69469.1	ProteinID:KRH69470.1	PFAM:PF00226	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI0002336E2B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:2718387..2723154

Molecular Weight (calculated)

46691.0 Da

IEP (calculated)

8.799

GRAVY (calculated)

-0.713

Length

413 amino acids

Sequence
(BLAST)

001: MPGHRSKSEK HDVDGGGGEK QLRRDPYEVL GVSRNSTDQE IKTAYRKMAL KYHPDKNAND PKAADMFKEV TFSYNILSDP DKRRQYDSAG FEAVESDNQE
101: LELDLSSLGA VNTMFAALFS KLGVPIKTTV SATVLEEALN GLVTIRPLPL GHNISKRVEK QCAHFYSVTI TEEEARAGFV CRVHSSDKSK FKLLYFDQED
201: NSGLSLALQE DSAKTGKVTS AGMYFLGFPV YRLDQTMNSI AAAKDPDTSF FRKLDGFQPC ELTELKAGTH VFAVYGDNFF KSANYTIEAL CAAPFSEEKE
301: NLRNIEAQIL SKRAEISKFE AEYREVLAQF SEMTNRYAHE MQAIDELLKN RNEIQASYTS APLKRTTSRS RSKNSSKEAK EDGQAKEKRS TRERPKKKKW
401: YNLHLRVDKR KAC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.