Factsheet for HORVU6Hr1G076490.9

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G110470.7

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	HORVU7Hr1G110470.7	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G289600.1	Wheat	nucleus	99.09	98.42
TraesCS6B01G340100.1	Wheat	nucleus	98.19	97.52
TraesCS6A01G310200.1	Wheat	nucleus	97.96	97.3
EES07283	Sorghum	nucleus	89.57	89.37
Os02t0741100-01	Rice	nucleus	89.34	89.14
Zm00001d017995_P003	Maize	nucleus	88.66	87.08
GSMUA_Achr3P06010_001	Banana	cytosol	72.11	75.71
HORVU7Hr1G039640.19	Barley	cytosol	73.47	73.47
PGSC0003DMT400040316	Potato	nucleus	67.57	72.33
Solyc05g006240.2.1	Tomato	nucleus	67.35	71.22
VIT_01s0026g00840.t01	Wine grape	cytosol	64.85	70.1
KRH69469	Soybean	nucleus	64.63	69.01
KRH74687	Soybean	nucleus	63.72	68.54
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	68.93	59.38
AT1G59980.1	Thale cress	nucleus	54.65	58.21
CDY30918	Canola	cytosol	53.74	57.52
CDY45159	Canola	cytosol	53.74	57.38
Bra027824.1-P	Field mustard	nucleus	53.29	56.76
HORVU3Hr1G042500.2	Barley	plastid	51.93	49.04
HORVU6Hr1G067130.1	Barley	cytosol	9.98	36.36
HORVU2Hr1G049750.1	Barley	cytosol	5.67	24.04
HORVU6Hr1G077430.1	Barley	cytosol	9.07	20.73

Protein Annotations

EMBL:AK359406	EnsemblPlants:HORVU6Hr1G076490.9	EnsemblPlantsGene:HORVU6Hr1G076490	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PANTHER:PTHR44272:SF1
PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI00020056D8	UniProt:F2D695	MapMan:26.3.1.3	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D695]

Coordinates

chrchr6H:+:526242429..526246509

Molecular Weight (calculated)

49329.8 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.722

Length

441 amino acids

Sequence
(BLAST)

001: MAGPKFGSFK SETKGDSAAG AAAQRRDPYE VLGVGRNATE QEIKSAFRRM ALKYHPDKNA DDPVASEKFQ EATFSYNILS DPDKRRQYDS SGFEAIEADS
101: HELELDLSSL NTVNTMFAAL FSKLGVPIKT TVSATVLEEA LNGSVEIAQL HLGKSVCKKV EKQSAHFYSV DITEEEAKLG LVCRVSSTAK SKFKLLYFEP
201: EENGGLSLAL QEDSAKTGKV TSAGMFFLGF PVYRFEHNNS AAAAKDPDSA FFKRLDGFQP CEVNELKEGT HYFAVYGDNF FKSATYTLEV VCAEPFSNEK
301: EKLRSVEAKI LAKRSELSKF ESEYREVLAK FTEMTSRYAQ EMQTIDELLN ERNAIHASYT NSPTLKRSSS DSKGKTSSKG SKSDDDQSVR KDKKSKSPTT
401: MEASASDEEG PNKKEKKPKE RLRRKRWFNI HHLKVDKRRP C

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.