Factsheet for GSMUA_Achr3P06010_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P15720_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	GSMUA_Achr1P15720_001	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040316	Potato	nucleus	72.38	73.79
Solyc05g006240.2.1	Tomato	nucleus	72.62	73.14
EES07283	Sorghum	nucleus	76.9	73.08
Os02t0741100-01	Rice	nucleus	76.67	72.85
KRH69469	Soybean	nucleus	71.19	72.4
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	88.1	72.27
HORVU6Hr1G076490.9	Barley	nucleus	75.71	72.11
TraesCS6D01G289600.1	Wheat	nucleus	76.19	72.07
TraesCS6B01G340100.1	Wheat	nucleus	76.19	72.07
VIT_01s0026g00840.t01	Wine grape	cytosol	70.0	72.06
KRH74687	Soybean	nucleus	70.24	71.95
TraesCS6A01G310200.1	Wheat	nucleus	75.95	71.85
Zm00001d017995_P003	Maize	nucleus	75.48	70.6
EER89501	Sorghum	cytosol	73.81	69.82
TraesCS7B01G100200.1	Wheat	cytosol	72.14	69.34
TraesCS7D01G196200.1	Wheat	cytosol	72.14	69.34
TraesCS7A01G194600.1	Wheat	cytosol	71.9	69.11
Zm00001d037257_P001	Maize	cytosol	69.52	68.87
HORVU7Hr1G039640.19	Barley	cytosol	68.81	65.53
GSMUA_Achr8P31640_001	Banana	cytosol	57.62	59.31
CDY45159	Canola	cytosol	57.62	58.6
CDY30918	Canola	cytosol	57.38	58.5
AT1G59980.1	Thale cress	nucleus	57.38	58.21
Bra027824.1-P	Field mustard	nucleus	57.14	57.97
GSMUA_Achr4P13770_001	Banana	cytosol	54.76	56.65
TraesCS7B01G498100.1	Wheat	cytosol	51.9	52.28
GSMUA_Achr4P06780_001	Banana	cytosol	6.19	48.15
GSMUA_Achr2P12110_001	Banana	cytosol	10.71	37.5
GSMUA_Achr9P21410_001	Banana	nucleus	52.62	36.35
GSMUA_Achr10P...	Banana	cytosol	10.48	33.33
GSMUA_Achr7P10040_001	Banana	cytosol	3.57	23.08
GSMUA_Achr9P15090_001	Banana	cytosol	5.24	22.68

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06010_001	EnsemblPlants:GSMUA_Achr3T06010_001	EnsemblPlantsGene:GSMUA_Achr3G06010_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2
PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0002949F52	UniProt:M0SC69	MapMan:26.3.1.3	:	:

Description

Chaperone protein dnaJ 16 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06010_001]

Coordinates

chr3:+:4049013..4056388

Molecular Weight (calculated)

47793.7 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.642

Length

420 amino acids

Sequence
(BLAST)

001: MPAPGFSSSK SERKGDTNKQ QQQRRDPYEV LGVPRNATEQ EIKSAYRRMA LKYHPDKNAN DPIAADVFKE VTFSYNILSD PDKRRQYDTS GFEAIESDSQ
101: ELELDLSSLG TVNTMFAALF SKLGVPIKTT VSATVLEEAL NGSVIIRSLP LGQSIARKVE KQSAHFYTVE ITEREAQMGV VCRVYSAEKS KFKLLYFEQE
201: ENGGLSLALQ EDSTKTGRVT SAGMFFLCFP VYRFDQSHSI AIAKDPDAKF FKKLDGFQAC EVNELKAGTH VFAVYGDNFF KSVNYTIEVM CAEQFSAEKE
301: KLRDVEAKIL TKRAELSKFE TEYREVLARF TEMTNKYAQE MQAIDELLKE RNTIHASYTI SPLKRNSSSS KISSPFNGSK SDEECPTIEK KPKDEKKSRD
401: RTRRKKWFKI HLKVDKRKAC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.