Factsheet for Zm00001d037257_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d046893_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	Zm00001d046893_P001	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89501	Sorghum	cytosol	97.41	93.02
TraesCS7D01G196200.1	Wheat	cytosol	83.02	80.55
TraesCS7B01G100200.1	Wheat	cytosol	82.55	80.09
TraesCS7A01G194600.1	Wheat	cytosol	82.55	80.09
HORVU7Hr1G039640.19	Barley	cytosol	79.01	75.96
Zm00001d017995_P003	Maize	nucleus	77.12	72.83
GSMUA_Achr3P06010_001	Banana	cytosol	68.87	69.52
PGSC0003DMT400040316	Potato	nucleus	65.09	66.99
Solyc05g006240.2.1	Tomato	nucleus	65.33	66.43
VIT_01s0026g00840.t01	Wine grape	cytosol	63.21	65.69
KRH69469	Soybean	nucleus	62.5	64.16
KRH74687	Soybean	nucleus	61.32	63.41
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	66.04	54.69
AT1G59980.1	Thale cress	nucleus	52.83	54.11
CDY30918	Canola	cytosol	52.12	53.64
CDY45159	Canola	cytosol	52.12	53.51
Bra027824.1-P	Field mustard	nucleus	51.65	52.9
TraesCS7B01G498100.1	Wheat	cytosol	51.65	52.52
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	49.06	51.11
Zm00001d017685_P006	Maize	cytosol	11.56	34.75
Zm00001d018131_P004	Maize	cytosol	8.73	25.69

Protein Annotations

EnsemblPlants:Zm00001d037257_P001	EnsemblPlants:Zm00001d037257_T001	EnsemblPlantsGene:Zm00001d037257	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PANTHER:PTHR44272:SF1
PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	ProteinID:AQK83427.1	ScanProsite:PS00636	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI00084559C3	UniProt:A0A1D6LW01	MapMan:26.3.1.3	:

Description

Chaperone protein dnaJ 16

Coordinates

chr6:-:118383037..118388594

Molecular Weight (calculated)

47426.9 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.677

Length

424 amino acids

Sequence
(BLAST)

001: MAGSRFGSFK SEKGDSASAA AAAGGAAQRR DPYEVLGVGR TATDQEIKSA FRRMALKYHP DKNGDDPVAS DRFQEVTFSY NILSDPDKRR QYDTSGFDAI
101: ESDSQELELD LSSLNTVNTV FAALFSKLGV PIKTTVSATV LEEALNGSVM VSQLQLGNSV QRKVEKQSAH FYSVDITEKQ AKMGLVCRVH SNDKSKFKED
201: SVKVGKVTAA GMYFLGFPVY RFEQNNLAAA AKDSDGAFFK RLDSFQPCDI HELKPGTHFF AVYGDNFFKS ASYTIEVVCG ESFPAEKEML RNVEAKILTK
301: RAELSKFESE YREVLAKFTE MTSKYTQEMQ AIDGLLKERN EIHASYTNNP PLKRSSSRNK AKSPSKVAKT GTEKHHQKEK KVKDHCMEGC GSDSDNSSEK
401: KSKERFPRKK WLNLPFKLDR RKTC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.