Factsheet for VIT_01s0026g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24259	Canola	cytosol	10.29	85.71
CDY65889	Canola	cytosol	18.38	82.42
KRH69469	Soybean	nucleus	81.86	80.87
PGSC0003DMT400040316	Potato	nucleus	80.88	80.1
KRH74687	Soybean	nucleus	80.39	80.0
Solyc05g006240.2.1	Tomato	nucleus	80.88	79.14
CDY50519	Canola	nucleus	72.06	72.24
CDY16243	Canola	nucleus	76.96	71.85
AT1G24120.1	Thale cress	nucleus	76.72	71.79
Bra024636.1-P	Field mustard	nucleus	75.74	71.53
CDY60793	Canola	nucleus	75.74	71.53
GSMUA_Achr3P06010_001	Banana	cytosol	72.06	70.0
HORVU6Hr1G076490.9	Barley	nucleus	70.1	64.85
Os02t0741100-01	Rice	nucleus	69.61	64.25
TraesCS6D01G289600.1	Wheat	nucleus	69.61	63.96
TraesCS6B01G340100.1	Wheat	nucleus	69.36	63.74
TraesCS6A01G310200.1	Wheat	nucleus	69.12	63.51
EER89501	Sorghum	cytosol	68.87	63.29
Zm00001d037257_P001	Maize	cytosol	65.69	63.21
TraesCS7B01G100200.1	Wheat	cytosol	67.65	63.16
TraesCS7D01G196200.1	Wheat	cytosol	67.65	63.16
EES07283	Sorghum	nucleus	68.38	63.12
TraesCS7A01G194600.1	Wheat	cytosol	66.91	62.47
Zm00001d017995_P003	Maize	nucleus	68.14	61.92
HORVU7Hr1G039640.19	Barley	cytosol	65.2	60.32
VIT_01s0011g03790.t01	Wine grape	nucleus	61.03	60.0
CDY50516	Canola	nucleus	50.25	58.24
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	71.57	57.03
CDY68909	Canola	nucleus	26.96	55.28
TraesCS7B01G498100.1	Wheat	cytosol	48.77	47.72
Bra016320.1-P	Field mustard	plastid	39.71	42.3
VIT_16s0039g01520.t01	Wine grape	cytosol	10.54	34.96
VIT_18s0001g07260.t01	Wine grape	cytosol	9.8	28.99

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100256999	wikigene:100256999	MapMan:26.3.1.3	EMBL:AM443832	ProteinID:CAN74067
ProteinID:CAN74067.1	ProteinID:CBI32083	ProteinID:CBI32083.3	UniProt:D7TNL0	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EMBL:FN596002	GO:GO:0008150	GO:GO:0009719	GO:GO:0009737	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	EntrezGene:LOC100256999	wikigene:LOC100256999	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	SMART:SM00271	SUPFAM:SSF46565	TIGR:TC53634
TIGR:TC67383	UniParc:UPI00015CAE5F	ArrayExpress:VIT_01s0026g00840	EnsemblPlantsGene:VIT_01s0026g00840	EnsemblPlants:VIT_01s0026g00840.t01	RefSeq:XP_002269863
RefSeq:XP_002269863.2	RefSeq:XP_010652978.1	:	:	:	:

Description

No Description!

Coordinates

chr1:-:9697764..9711600

Molecular Weight (calculated)

46046.6 Da

IEP (calculated)

8.610

GRAVY (calculated)

-0.627

Length

408 amino acids

Sequence
(BLAST)

001: MPGHRSQSEK TDAGKQLRRD PYEVLGVLRN STDQEIKSAY RKMALKYHPD KNANDPKAAD MFKEVTFSYN ILSDPDKRRQ YDTAGFEAVE SEGQELELDL
101: SNLGAVNTMF AALFSKLGVP IKTTVSATVL EDALNGVVTV RPLTLGQPVV KKVEKQCAHF YSVTLTEEEA QTGFVCRVQS SDKSKFKLLY FDQEEGGGLN
201: LSLQEDSART GKVTSAGMYF LGFPVYRLDQ TVNSMAAAKD PDSAFFKRLD GFQPCEMTEL KAGTHVFAVY GDNFFKSVSY TIEALCTAPF AEEKENLRAV
301: EAQILTKRVE LSKFETEYRE VLTQFTEMTS RYAQEMQAID DLLKQRNEIH ASYSSAPPIK RSRSKNRGLS KDSKDDGQVK DKKPAFRERP KKKKWYNIHL
401: KVDKSKPC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.