CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65889	Canola	cytosol	51.02	27.47
CDY71746	Canola	endoplasmic reticulum, extracellular	48.98	11.48
CDY50516	Canola	nucleus	75.51	10.51
Bra024636.1-P	Field mustard	nucleus	91.84	10.42
CDY60793	Canola	nucleus	91.84	10.42
CDY16243	Canola	nucleus	91.84	10.3
VIT_01s0026g00840.t01	Wine grape	cytosol	85.71	10.29
CDY50519	Canola	nucleus	81.63	9.83
KRH69469	Soybean	nucleus	81.63	9.69
AT1G24120.1	Thale cress	nucleus	85.71	9.63
KRH74687	Soybean	nucleus	79.59	9.51
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	46.94	9.35
PGSC0003DMT400040316	Potato	nucleus	77.55	9.22
Solyc05g006240.2.1	Tomato	nucleus	77.55	9.11
CDY49645	Canola	cytosol	22.45	8.8
CDX69435	Canola	cytosol	22.45	8.8
CDX70703	Canola	cytosol	22.45	8.73
CDX78701	Canola	cytosol	22.45	8.73
CDY71923	Canola	cytosol	18.37	8.49
CDY30918	Canola	cytosol	67.35	8.01
CDY45159	Canola	cytosol	67.35	7.99
CDY59029	Canola	nucleus	65.31	7.8
CDX96027	Canola	nucleus	65.31	7.8
CDY37476	Canola	extracellular, plasma membrane	36.73	7.76
CDY17195	Canola	cytosol	18.37	7.38
CDY27949	Canola	cytosol	18.37	7.38
CDX81506	Canola	nucleus	61.22	7.14
CDY44905	Canola	nucleus	59.18	7.07
CDY53751	Canola	cytosol	22.45	7.01
CDY33230	Canola	endoplasmic reticulum, extracellular	20.41	5.62
CDY62617	Canola	extracellular	20.41	5.0
CDX92921	Canola	extracellular, plasma membrane	12.24	2.97
CDY24260	Canola	plastid	12.24	2.39
CDY68909	Canola	nucleus	2.04	0.5

Protein Annotations

EnsemblPlants:CDY24259	EnsemblPlantsGene:GSBRNA2T00026402001	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44272
PANTHER:PTHR44272:SF2	ProteinID:CDY24259	ProteinID:CDY24259.1	SUPFAM:SSF46565	UniParc:UPI0004EF2DFC	UniProt:A0A078GFZ2
MapMan:35.1	:	:	:	:	:

Description

BnaC03g42320DBnaC03g42320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFZ2]

Coordinates

chrLK032156:-:62281..62634

Molecular Weight (calculated)

5493.3 Da

IEP (calculated)

3.920

GRAVY (calculated)

-0.378

Length

49 amino acids

Sequence
(BLAST)

1: MFKEVTFSYN ILSDPEKHRQ YDTSGFEAVE AEGQELELDL SSLGAVLPT

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.