Factsheet for PGSC0003DMT400040316

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006240.2.1	Tomato	nucleus	97.57	96.4
VIT_01s0026g00840.t01	Wine grape	cytosol	80.1	80.88
KRH69469	Soybean	nucleus	79.13	78.93
KRH74687	Soybean	nucleus	77.91	78.29
CDY65889	Canola	cytosol	17.23	78.02
CDY24259	Canola	cytosol	9.22	77.55
GSMUA_Achr3P06010_001	Banana	cytosol	73.79	72.38
AT1G24120.1	Thale cress	nucleus	74.51	70.41
CDY50519	Canola	nucleus	69.17	70.02
CDY60793	Canola	nucleus	72.09	68.75
CDY16243	Canola	nucleus	72.82	68.65
Bra024636.1-P	Field mustard	nucleus	71.84	68.52
EES07283	Sorghum	nucleus	72.57	67.65
Os02t0741100-01	Rice	nucleus	72.57	67.65
HORVU6Hr1G076490.9	Barley	nucleus	72.33	67.57
TraesCS6D01G289600.1	Wheat	nucleus	72.33	67.12
TraesCS6B01G340100.1	Wheat	nucleus	72.33	67.12
TraesCS6A01G310200.1	Wheat	nucleus	72.09	66.89
EER89501	Sorghum	cytosol	70.87	65.77
Zm00001d017995_P003	Maize	nucleus	71.6	65.7
TraesCS7D01G196200.1	Wheat	cytosol	69.66	65.68
TraesCS7B01G100200.1	Wheat	cytosol	69.66	65.68
TraesCS7A01G194600.1	Wheat	cytosol	69.42	65.45
Zm00001d037257_P001	Maize	cytosol	66.99	65.09
HORVU7Hr1G039640.19	Barley	cytosol	66.5	62.13
PGSC0003DMT400037773	Potato	cytosol	58.25	58.11
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	72.09	58.01
PGSC0003DMT400015325	Potato	cytosol	51.21	57.65
CDY50516	Canola	nucleus	48.54	56.82
CDY68909	Canola	nucleus	26.21	54.27
TraesCS7B01G498100.1	Wheat	cytosol	49.03	48.44
Bra016320.1-P	Field mustard	plastid	39.56	42.56
PGSC0003DMT400068101	Potato	cytosol	10.68	35.2
PGSC0003DMT400033584	Potato	cytosol	9.71	28.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400040316	EnsemblPlantsGene:PGSC0003DMG400015608	EntrezGene:102601185	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	PFAM:PF00226
PFscan:PS50076	PGSC:PGSC0003DMG400015608	PRINTS:PR00625	RefSeq:XP_006355930.1	ScanProsite:PS00636	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002967FC6	UniProt:M1B9Q6	MapMan:26.3.1.3	:

Description

Altered response to gravity (Arg1), plant [Source:PGSC_GENE;Acc:PGSC0003DMG400015608]

Coordinates

chr5:+:7047237..7053233

Molecular Weight (calculated)

46216.7 Da

IEP (calculated)

8.964

GRAVY (calculated)

-0.630

Length

412 amino acids

Sequence
(BLAST)

001: MPGHKSKSEK GEAEKPLRRD PYDVLGVSRN STDQEIKSAY RKLALKYHPD KNANDPKAAD MFKEVTFSYN ILSDQDKRRQ YDSAGFEAVE SESQDLELDL
101: SSLGTVNTMF AALFSKLGVP IKTTVSATVL EEALNGSVSI QPLPLGQPLC KKVEKQSAHF YSVTITEKEA KGGLVCRVHS REKSKFKLLY FDQEENGGLS
201: LALQEDSSKT GKVTSAGMYF LGFPVYHMDQ TQTSAAATKD PDSAFFKKLD GFQPCEITEL KAGTHVFAIY GDNFFRSVSY TIEVVCAEPF TVEKENLRAV
301: EAQILSKRVE LSKFETEYRE VLTQFTEMTS RYAQEMQAID ELLKDRNEIH ASYTSLPVMK RSSSSSNRSK NKGGSKAASE DGPVKEKKSL RDRTKKKKWF
401: NIPLKVDKRK AC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.