CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24259	Canola	cytosol	27.47	51.02
CDY71923	Canola	cytosol	29.67	25.47
CDX78701	Canola	cytosol	34.07	24.6
CDX69435	Canola	cytosol	32.97	24.0
CDY49645	Canola	cytosol	32.97	24.0
CDX70703	Canola	cytosol	32.97	23.81
CDY17195	Canola	cytosol	30.77	22.95
CDY27949	Canola	cytosol	30.77	22.95
CDY16243	Canola	nucleus	92.31	19.22
CDY53751	Canola	cytosol	31.87	18.47
VIT_01s0026g00840.t01	Wine grape	cytosol	82.42	18.38
CDY60793	Canola	nucleus	86.81	18.29
AT1G24120.1	Thale cress	nucleus	86.81	18.12
Bra024636.1-P	Field mustard	nucleus	85.71	18.06
KRH69469	Soybean	nucleus	80.22	17.68
CDY50519	Canola	nucleus	78.02	17.44
PGSC0003DMT400040316	Potato	nucleus	78.02	17.23
Solyc05g006240.2.1	Tomato	nucleus	78.02	17.03
KRH74687	Soybean	nucleus	75.82	16.83
CDY33230	Canola	endoplasmic reticulum, extracellular	31.87	16.29
CDY45159	Canola	cytosol	67.03	14.77
CDY30918	Canola	cytosol	65.93	14.56
CDX96027	Canola	nucleus	63.74	14.15
CDY59029	Canola	nucleus	62.64	13.9
CDY44905	Canola	nucleus	59.34	13.17
CDX81506	Canola	nucleus	60.44	13.1
CDY50516	Canola	nucleus	34.07	8.81
CDY71746	Canola	endoplasmic reticulum, extracellular	18.68	8.13
CDY62617	Canola	extracellular	16.48	7.5
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	19.78	7.32
CDY24260	Canola	plastid	19.78	7.17
CDX92921	Canola	extracellular, plasma membrane	14.29	6.44
CDY37476	Canola	extracellular, plasma membrane	15.38	6.03
CDY68909	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY65889	EnsemblPlantsGene:GSBRNA2T00050954001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ProteinID:CDY65889	ProteinID:CDY65889.1	ScanProsite:PS00636	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI0004EACFEF	UniProt:A0A078JGR1	MapMan:35.1	:	:	:

Description

BnaC02g45150DBnaC02g45150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGR1]

Coordinates

chrLK034989:-:9150..10412

Molecular Weight (calculated)

10610.5 Da

IEP (calculated)

9.927

GRAVY (calculated)

-1.241

Length

91 amino acids

Sequence
(BLAST)

1: MTTNRSKSEK KDAEKQLRRD PYEVLGVLKN STDQEIKSTY RKLSLKNHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ YDTAGFERPL K

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.