Factsheet for Solyc05g006240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040316	Potato	nucleus	96.4	97.57
VIT_01s0026g00840.t01	Wine grape	cytosol	79.14	80.88
KRH69469	Soybean	nucleus	77.94	78.69
KRH74687	Soybean	nucleus	76.74	78.05
CDY65889	Canola	cytosol	17.03	78.02
CDY24259	Canola	cytosol	9.11	77.55
GSMUA_Achr3P06010_001	Banana	cytosol	73.14	72.62
AT1G24120.1	Thale cress	nucleus	74.1	70.87
CDY50519	Canola	nucleus	68.82	70.52
CDY60793	Canola	nucleus	71.7	69.21
CDY16243	Canola	nucleus	72.42	69.11
Bra024636.1-P	Field mustard	nucleus	71.46	68.98
EES07283	Sorghum	nucleus	71.7	67.65
Os02t0741100-01	Rice	nucleus	71.46	67.42
HORVU6Hr1G076490.9	Barley	nucleus	71.22	67.35
TraesCS6D01G289600.1	Wheat	nucleus	71.22	66.89
TraesCS6B01G340100.1	Wheat	nucleus	71.22	66.89
TraesCS6A01G310200.1	Wheat	nucleus	70.98	66.67
TraesCS7D01G196200.1	Wheat	cytosol	69.06	65.9
TraesCS7B01G100200.1	Wheat	cytosol	69.06	65.9
EER89501	Sorghum	cytosol	70.02	65.77
Zm00001d017995_P003	Maize	nucleus	70.74	65.7
TraesCS7A01G194600.1	Wheat	cytosol	68.82	65.68
Zm00001d037257_P001	Maize	cytosol	66.43	65.33
HORVU7Hr1G039640.19	Barley	cytosol	66.19	62.59
Solyc04g007370.2.1	Tomato	cytosol	59.95	60.39
Solyc05g009160.2.1	Tomato	nucleus	57.55	58.11
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	70.98	57.81
CDY50516	Canola	nucleus	48.44	57.39
CDY68909	Canola	nucleus	26.38	55.28
TraesCS7B01G498100.1	Wheat	cytosol	48.2	48.2
Bra016320.1-P	Field mustard	plastid	39.57	43.08
Solyc03g097240.2.1	Tomato	cytosol	10.79	36.0
Solyc04g076080.2.1	Tomato	cytosol	9.11	27.14

Protein Annotations

EnsemblPlants:Solyc05g006240.2.1	EnsemblPlantsGene:Solyc05g006240.2	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI00027673BC
UniProt:K4BWF1	MapMan:26.3.1.3	:	:	:	:

Description

No Description!

Coordinates

chr5:-:898981..903747

Molecular Weight (calculated)

47034.7 Da

IEP (calculated)

9.209

GRAVY (calculated)

-0.674

Length

417 amino acids

Sequence
(BLAST)

001: MPGHKSKSEK GEAEKPLRRD PYEVLGVSRN SSDQEIKSAY RKLALKYHPD KNANDPKAAD MFKEVTFSYN ILSDQDKRRQ YDSAGFEAVE SESQDLELDL
101: SSLGTVNTMF AALFSKLGVP IKTTVSATVL EEALNGSVSI QPLPLGQPLC KKVEKQSAHF YSVTITEKEA KGGLVCRVHS REKSKFKLLY FDQEENGGLS
201: LALQEDSSKT GKVTSAGMYF LGFPVYHMDQ TQTSAAATKD PDSAFFKKLD GFQPCEITEL KAGTHVFAIY GDNFFKSVSY TIEVVCAEPF TEEKENLRAV
301: EAQILSKRVE LSKFETEYRE VLTQFTEMTS RYAQEMQAID ELLKHRNEIH ASYTTLPVMK RSSSSSNRSK NKSGSKAASE DGSVKEKKPL RDRTKKKKWF
401: NIPLKVDKRK AFYRETR

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.