Factsheet for Solyc04g007370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015325	Potato	cytosol	87.2	98.63
Solyc05g009160.2.1	Tomato	nucleus	85.99	86.2
VIT_01s0011g03790.t01	Wine grape	nucleus	84.54	84.34
KRH35922	Soybean	nucleus	82.85	83.66
KRG90857	Soybean	nucleus	82.37	83.17
Bra033942.1-P	Field mustard	nucleus	81.16	81.95
CDY44905	Canola	nucleus	81.16	81.95
CDX96027	Canola	nucleus	80.92	81.71
CDY59029	Canola	nucleus	80.92	81.71
Bra004301.1-P	Field mustard	nucleus	79.47	81.64
AT1G68370.1	Thale cress	nucleus	80.19	80.98
Os01t0512100-01	Rice	plasma membrane	78.74	80.89
TraesCS3D01G201400.2	Wheat	cytosol	78.99	80.15
TraesCS3A01G202200.1	Wheat	cytosol	78.5	79.66
CDX81506	Canola	nucleus	80.43	79.29
EES16141	Sorghum	nucleus	78.02	79.17
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	77.29	78.62
GSMUA_Achr4P13770_001	Banana	cytosol	76.33	77.83
HORVU3Hr1G042500.2	Barley	plastid	77.54	68.74
Solyc05g006240.2.1	Tomato	nucleus	60.39	59.95
GSMUA_Achr9P21410_001	Banana	nucleus	71.5	48.68
Solyc03g097240.2.1	Tomato	cytosol	12.08	40.0
Solyc04g076080.2.1	Tomato	cytosol	10.14	30.0
Os03t0262500-01	Rice	plasma membrane, plastid	6.52	14.44

Protein Annotations

EnsemblPlants:Solyc04g007370.2.1	EnsemblPlantsGene:Solyc04g007370.2	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI00027669B2	UniProt:K4BNP4	MapMan:26.3.1.3

Description

No Description!

Coordinates

chr4:-:1065839..1072643

Molecular Weight (calculated)

45659.6 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.507

Length

414 amino acids

Sequence
(BLAST)

001: MAGSKMEGSS APAVRRDPYE VLSVARDSSD QEIKSAYRKL ALKYHPDKNA NNPEASELFK EVAYSYGVLS DPEKRRQYDM AGFEAIDAEG TDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA LNGTVTIRPL PIGTSLSGKV EKQSAHFFGV TISNEQAEAG LVVRVTSAAQ SKFKLLYFEQ DANGGYGLAL
201: QEDSEKTGKV TSAGMYFLHF QVYRMDSTVN ALAMAKDPEA AFFKKLDGLQ PCEVSELKAG THIFAVYGDN FFKPATYIIE ALCAKSYEDT TVKLKEIEAQ
301: ILRKRNELRQ FEIEYRKALA HFQEVTNRYS QEKLSVDEML KQRDSIHSSF TVSRSIANLS GSGSGHFSNG SSSKVPGEDY KTDSPGEDGS SDSKDKSSKK
401: RWFNLNLKGS DKKN

Best Arabidopsis Sequence Match ( AT1G68370.1 )
(BLAST)

001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG

Arabidopsis Description

ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.