CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	97.06	97.3
Os01t0512100-01	Rice	plasma membrane	92.16	93.3
TraesCS3A01G202200.1	Wheat	cytosol	91.18	91.18
TraesCS3D01G201400.2	Wheat	cytosol	90.93	90.93
GSMUA_Achr8P31640_001	Banana	cytosol	83.09	83.09
KRH35922	Soybean	nucleus	80.15	79.76
HORVU3Hr1G042500.2	Barley	plastid	91.18	79.66
KRG90857	Soybean	nucleus	79.9	79.51
VIT_01s0011g03790.t01	Wine grape	nucleus	80.64	79.28
PGSC0003DMT400037773	Potato	cytosol	79.17	78.21
Solyc04g007370.2.1	Tomato	cytosol	79.17	78.02
Solyc05g009160.2.1	Tomato	nucleus	78.43	77.48
CDY59029	Canola	nucleus	77.45	77.07
CDX96027	Canola	nucleus	77.45	77.07
CDY44905	Canola	nucleus	77.21	76.83
Bra004301.1-P	Field mustard	nucleus	75.74	76.67
Bra033942.1-P	Field mustard	nucleus	76.96	76.59
PGSC0003DMT400015325	Potato	cytosol	68.63	76.5
AT1G68370.1	Thale cress	nucleus	76.47	76.1
CDX81506	Canola	nucleus	76.72	74.52
EES07283	Sorghum	nucleus	56.37	52.04
EER89501	Sorghum	cytosol	55.39	50.9
EES05690	Sorghum	cytosol	11.03	36.89
EES07561	Sorghum	cytosol	9.07	28.46
Os03t0262500-01	Rice	plasma membrane, plastid	7.11	15.51

Protein Annotations

Gene3D:1.10.287.110	MapMan:26.3.1.3	EntrezGene:8068816	UniProt:C5YPL7	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EnsemblPlants:EES16141	ProteinID:EES16141	ProteinID:EES16141.1	GO:GO:0008150	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009958	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44272	SMART:SM00271
EnsemblPlantsGene:SORBI_3008G124900	SUPFAM:SSF46565	unigene:Sbi.3538	UniParc:UPI0001A8850B	RefSeq:XP_002442303.1	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:54835213..54843847

Molecular Weight (calculated)

45497.6 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.544

Length

408 amino acids

Sequence
(BLAST)

001: MSSSGKMEGP SAPAVRRDPY EVLSVPRDSS DQEIKSAYRK LALKYHPDKN ASNPEASELF KEVAYSYSIL SDPEKRRQYD TAGFEALENE GMDMEIDLSN
101: LGTVNTMFAA LFSKLGVPIK TTISPTVLEE AMNGTVTVRP LPVGTSATGK VDKQCAHFFG VTISEEQAHS GIVVRVTSPA QSKFKLLYFE QEVNGGYGLA
201: LQEDSQKTGK VTSAGMYFLH FQVYRMDSTV NALAMAKDPE AAFFKRLEGL QPCEVSALKP GTHIFAVYGD NFFKPASYII EAMCAKSYED TTERLKEIES
301: KILAKRNDLR QFETEYRKAL ARFQEVTTRY TQEREAVDDM LRERDNIHCS FTTERTLVNP VGAGSSSSRY TVEQSIPESP ENGSVDGKDK SGKKKWFNLN
401: LNRSDKKA

Best Arabidopsis Sequence Match ( AT1G68370.1 )
(BLAST)

001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG

Arabidopsis Description

ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.