Factsheet for VIT_01s0011g03790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35922	Soybean	nucleus	88.19	89.27
KRG90857	Soybean	nucleus	87.23	88.29
Solyc04g007370.2.1	Tomato	cytosol	84.34	84.54
PGSC0003DMT400037773	Potato	cytosol	84.1	84.5
Solyc05g009160.2.1	Tomato	nucleus	83.86	84.26
PGSC0003DMT400015325	Potato	cytosol	74.22	84.15
CDY44905	Canola	nucleus	82.89	83.9
Bra033942.1-P	Field mustard	nucleus	82.65	83.66
CDX96027	Canola	nucleus	82.65	83.66
AT1G68370.1	Thale cress	nucleus	82.41	83.41
Bra004301.1-P	Field mustard	nucleus	80.96	83.37
CDY59029	Canola	nucleus	82.17	83.17
GSMUA_Achr8P31640_001	Banana	cytosol	81.2	82.6
CDX81506	Canola	nucleus	82.41	81.43
Os01t0512100-01	Rice	plasma membrane	79.04	81.39
EES16141	Sorghum	nucleus	79.28	80.64
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	78.55	80.1
TraesCS3A01G202200.1	Wheat	cytosol	78.55	79.9
TraesCS3D01G201400.2	Wheat	cytosol	78.31	79.66
GSMUA_Achr4P13770_001	Banana	cytosol	76.63	78.33
HORVU3Hr1G042500.2	Barley	plastid	77.59	68.95
VIT_01s0026g00840.t01	Wine grape	cytosol	60.0	61.03
GSMUA_Achr9P21410_001	Banana	nucleus	70.6	48.19
VIT_16s0039g01520.t01	Wine grape	cytosol	11.57	39.02
VIT_18s0001g07260.t01	Wine grape	cytosol	9.88	29.71
Os03t0262500-01	Rice	plasma membrane, plastid	6.51	14.44

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100252578	wikigene:100252578	MapMan:26.3.1.3	UniProt:A5BMV4	EMBL:AM465028
ProteinID:CAN72503	ProteinID:CAN72503.1	ProteinID:CBI26996	ProteinID:CBI26996.3	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EMBL:FN595752	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100252578
wikigene:LOC100252578	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44272
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000152152D	ArrayExpress:VIT_01s0011g03790	EnsemblPlantsGene:VIT_01s0011g03790	EnsemblPlants:VIT_01s0011g03790.t01
unigene:Vvi.3461	RefSeq:XP_002283449	RefSeq:XP_002283449.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:3429615..3441498

Molecular Weight (calculated)

45914.9 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.542

Length

415 amino acids

Sequence
(BLAST)

001: MGSKLEGPSA PAVRRDPYEV LSVSRDSTDQ EIKTAYRKLA LKYHPDKNAS NPEASELFKE VAYSYNILSD PEKRRQYDSA GFEALDSDSM DMEIDLSNLG
101: TVNTMFAALF SKLGVPIKTT VSANVLEEAL NGTVTVRPLP VGTSVSGKVD KQCAHFFGVT INEEQAQAGI VVRVTSSSQS KFKLLYFEQD ANGGYGLALQ
201: EDSEKTGKVT SAGMYFLHFQ VYRMDSTLNA LAMAKDPEAA FFKRLEGLQP CEVSELKAGT HIFAVYGDNF FKTASYTIEA LCAKSYEDTT EKLKDIEAQI
301: LRKRTELRQF ETEYRKALAR FQEVTNRYGQ EKQCVDELLK QRDSIHCSFT VTKTANNSII SGSGSNMSNG SSSKIPNDDL KVESPGEDVS SEGKDKSSKK
401: KWFNLNLKGS DKKSG

Best Arabidopsis Sequence Match ( AT1G68370.1 )
(BLAST)

001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG

Arabidopsis Description

ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.