CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35922	Soybean	nucleus	98.54	98.54
VIT_01s0011g03790.t01	Wine grape	nucleus	88.29	87.23
AT1G68370.1	Thale cress	nucleus	83.66	83.66
CDX96027	Canola	nucleus	83.66	83.66
Bra004301.1-P	Field mustard	nucleus	82.2	83.62
CDY59029	Canola	nucleus	83.17	83.17
CDY44905	Canola	nucleus	83.17	83.17
Bra033942.1-P	Field mustard	nucleus	83.17	83.17
PGSC0003DMT400015325	Potato	cytosol	73.66	82.51
Solyc04g007370.2.1	Tomato	cytosol	83.17	82.37
PGSC0003DMT400037773	Potato	cytosol	82.93	82.32
Solyc05g009160.2.1	Tomato	nucleus	82.44	81.84
GSMUA_Achr8P31640_001	Banana	cytosol	80.98	81.37
CDX81506	Canola	nucleus	82.68	80.71
Os01t0512100-01	Rice	plasma membrane	79.02	80.4
EES16141	Sorghum	nucleus	79.51	79.9
TraesCS3D01G201400.2	Wheat	cytosol	78.54	78.92
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	78.29	78.87
TraesCS3A01G202200.1	Wheat	cytosol	78.29	78.68
GSMUA_Achr4P13770_001	Banana	cytosol	75.85	76.6
HORVU3Hr1G042500.2	Barley	plastid	78.05	68.52
KRH49472	Soybean	cytosol	44.63	63.76
KRH69469	Soybean	nucleus	59.27	58.84
KRH74687	Soybean	nucleus	58.29	58.29
KRH65752	Soybean	cytosol	12.68	55.91
GSMUA_Achr9P21410_001	Banana	nucleus	69.27	46.71
KRH23998	Soybean	cytosol	11.22	37.4
KRH29318	Soybean	cytosol	10.98	36.0
KRH16828	Soybean	cytosol	10.49	31.16
KRH72437	Soybean	mitochondrion	10.49	27.74
Os03t0262500-01	Rice	plasma membrane, plastid	6.34	13.9

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100777978	MapMan:26.3.1.3	EMBL:ACUP02012648	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_20G117900	UniProt:I1NFL5	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EnsemblPlants:KRG90857	ProteinID:KRG90857	ProteinID:KRG90857.1	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR44272	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000233DBE8	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:36065920..36079220

Molecular Weight (calculated)

45348.3 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.584

Length

410 amino acids

Sequence
(BLAST)

001: MGMGSKMEGP STPAIRRDPY EVLSVSKDST DQEIKTAYRK LALKYHPDKN ASNPEASELF KEVAYSYSIL SDPEKRRQYD SAGFEALDAD SMDMEIDLSN
101: LGTVNTMFAA LFSKLGVPIK TTISANVLEE ALNGTVTVRP LPIGSSVSGK VEKQCAHFFG VTINEQQAES GIVVRVTSTA QSKFKLLYFE QDANGGYGLA
201: LQEDSEKTGK VTSAGMYFLH FQVYRMDSTV NALAMAKDPE GAFFKRLEGL QPCEVSELKP GTHIFAVYGD NFFKTASYMI EAVCAKSYED TTQKLKDNEA
301: QILRKRNELR QFEAEYRKAL ARYQEVTDRY TKEKQSVDEL LKQRDGIHSS FTTVKSTNFS GSGSNLSNGS SSKINGDESP GEDGGSDGKD KSGKKKWFNL
401: NLRGSDKKLI

Best Arabidopsis Sequence Match ( AT1G68370.1 )
(BLAST)

001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG

Arabidopsis Description

ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.