Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59029 | Canola | nucleus | 94.63 | 94.63 |
| CDX96027 | Canola | nucleus | 94.39 | 94.39 |
| Bra004301.1-P | Field mustard | nucleus | 92.68 | 94.29 |
| KRG90857 | Soybean | nucleus | 83.66 | 83.66 |
| KRH35922 | Soybean | nucleus | 83.66 | 83.66 |
| VIT_01s0011g03790.t01 | Wine grape | nucleus | 83.41 | 82.41 |
| PGSC0003DMT400037773 | Potato | cytosol | 82.68 | 82.08 |
| Solyc05g009160.2.1 | Tomato | nucleus | 82.2 | 81.6 |
| Solyc04g007370.2.1 | Tomato | cytosol | 80.98 | 80.19 |
| PGSC0003DMT400015325 | Potato | cytosol | 71.22 | 79.78 |
| GSMUA_Achr8P31640_001 | Banana | cytosol | 76.83 | 77.21 |
| Os01t0512100-01 | Rice | plasma membrane | 75.85 | 77.17 |
| TraesCS3D01G201400.2 | Wheat | cytosol | 76.59 | 76.96 |
| TraesCS3A01G202200.1 | Wheat | cytosol | 76.59 | 76.96 |
| EES16141 | Sorghum | nucleus | 76.1 | 76.47 |
| Zm00001d041627_P002 | Maize | mitochondrion, plasma membrane | 75.85 | 76.41 |
| HORVU3Hr1G042500.2 | Barley | plastid | 76.1 | 66.81 |
| AT1G24120.1 | Thale cress | nucleus | 59.02 | 55.5 |
| AT1G59980.1 | Thale cress | nucleus | 50.24 | 49.76 |
| AT2G33735.1 | Thale cress | cytosol | 9.27 | 31.93 |
| AT5G16650.2 | Thale cress | cytosol | 10.98 | 26.95 |
| Os03t0262500-01 | Rice | plasma membrane, plastid | 6.59 | 14.44 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:26.3.1.3 | EntrezGene:843166 | ProteinID:AAF26045.1 | ProteinID:AEE34786.1 | EMBL:AF089810 |
| Symbol:ARG1 | ArrayExpress:AT1G68370 | EnsemblPlantsGene:AT1G68370 | RefSeq:AT1G68370 | TAIR:AT1G68370 | RefSeq:AT1G68370-TAIR-G |
| EnsemblPlants:AT1G68370.1 | TAIR:AT1G68370.1 | Unigene:At.11013 | EMBL:BT025556 | ncoils:Coil | InterPro:DnaJ_domain |
| InterPro:DnaJ_domain_CS | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 |
| GO:GO:0005856 | GO:GO:0008092 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 |
| GO:GO:0009958 | GO:GO:0016020 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | RefSeq:NP_177004.1 |
| PFAM:PF00226 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00625 | ScanProsite:PS00636 |
| PFscan:PS50076 | PANTHER:PTHR44272 | UniProt:Q1H5A8 | UniProt:Q9ZSY2 | SMART:SM00271 | SUPFAM:SSF46565 |
| UniParc:UPI00000A1048 | SEG:seg | : | : | : | : |
Description
ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
Coordinates
chr1:-:25631689..25634780
Molecular Weight (calculated)
45486.3 Da
IEP (calculated)
6.537
GRAVY (calculated)
-0.617
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.