Factsheet for AT1G24120.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16243	Canola	nucleus	92.2	91.99
Bra024636.1-P	Field mustard	nucleus	90.83	91.67
CDY60793	Canola	nucleus	90.37	91.2
CDY65889	Canola	cytosol	18.12	86.81
CDY24259	Canola	cytosol	9.63	85.71
VIT_01s0026g00840.t01	Wine grape	cytosol	71.79	76.72
KRH69469	Soybean	nucleus	70.64	74.58
PGSC0003DMT400040316	Potato	nucleus	70.41	74.51
Solyc05g006240.2.1	Tomato	nucleus	70.87	74.1
KRH74687	Soybean	nucleus	69.04	73.41
AT1G59980.1	Thale cress	nucleus	58.95	62.08
AT1G68370.1	Thale cress	nucleus	55.5	59.02
AT2G33735.1	Thale cress	cytosol	8.49	31.09
AT5G16650.2	Thale cress	cytosol	10.55	27.54

Protein Annotations

Gene3D:1.10.287.110	MapMan:26.3.1.3	EntrezGene:839024	UniProt:A0A178WD97	ProteinID:AAC00573.1	ProteinID:AEE30480.1
Symbol:ARL1	ArrayExpress:AT1G24120	EnsemblPlantsGene:AT1G24120	RefSeq:AT1G24120	TAIR:AT1G24120	RefSeq:AT1G24120-TAIR-G
EnsemblPlants:AT1G24120.1	TAIR:AT1G24120.1	EMBL:AY074564	EMBL:AY226825	Unigene:At.41480	EMBL:BT025997
ncoils:Coil	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0005575	GO:GO:0008150	GO:GO:0009719
GO:GO:0009737	GO:GO:0016020	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	RefSeq:NP_173822.2
ProteinID:OAP16387.1	PFAM:PF00226	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR44272	PANTHER:PTHR44272:SF2	UniProt:Q1EBT7	UniProt:Q8VXV4	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI00000AAA3B	SEG:seg	:	:	:	:

Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]

Coordinates

chr1:-:8529064..8532262

Molecular Weight (calculated)

49307.3 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.630

Length

436 amino acids

Sequence
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.