Factsheet for Solyc05g009160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037773	Potato	cytosol	98.55	98.55
Solyc04g007370.2.1	Tomato	cytosol	86.2	85.99
VIT_01s0011g03790.t01	Wine grape	nucleus	84.26	83.86
KRH35922	Soybean	nucleus	82.57	83.17
CDY44905	Canola	nucleus	82.08	82.68
KRG90857	Soybean	nucleus	81.84	82.44
AT1G68370.1	Thale cress	nucleus	81.6	82.2
Bra033942.1-P	Field mustard	nucleus	81.6	82.2
CDY59029	Canola	nucleus	81.36	81.95
CDX96027	Canola	nucleus	81.11	81.71
Bra004301.1-P	Field mustard	nucleus	79.42	81.39
CDX81506	Canola	nucleus	81.36	80.0
Os01t0512100-01	Rice	plasma membrane	76.76	78.66
EES16141	Sorghum	nucleus	77.48	78.43
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	77.24	78.38
TraesCS3A01G202200.1	Wheat	cytosol	77.0	77.94
TraesCS3D01G201400.2	Wheat	cytosol	77.0	77.94
GSMUA_Achr4P13770_001	Banana	cytosol	74.82	76.11
HORVU3Hr1G042500.2	Barley	plastid	75.79	67.02
Solyc05g006240.2.1	Tomato	nucleus	58.11	57.55
GSMUA_Achr9P21410_001	Banana	nucleus	69.49	47.2
Solyc03g097240.2.1	Tomato	cytosol	11.86	39.2
Solyc04g076080.2.1	Tomato	cytosol	9.93	29.29
Os03t0262500-01	Rice	plasma membrane, plastid	6.54	14.44

Protein Annotations

EnsemblPlants:Solyc05g009160.2.1	EnsemblPlantsGene:Solyc05g009160.2	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002766894
UniProt:K4BX90	MapMan:26.3.1.3	:	:	:	:

Description

No Description!

Coordinates

chr5:+:3288278..3295690

Molecular Weight (calculated)

45729.5 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.561

Length

413 amino acids

Sequence
(BLAST)

001: MSGSKLEGPS APVVRRDPYE VLAVTRDSSD QEIKTAYRKL ALKYHPDKNA NNPEASEHFK EVAYSYSILS DPEKRRQYDM AGFEALEAEG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TISANVLEEA LNGTVTVRPL PIGTSVSGKV EKQNAHFFGV TISDEQAEAG IVVRATSAAQ SKFKLLYFEH DVSGGYGLAL
201: QEDSEKAGKV TSAGMYFLHF QVYRMDSTVN ALAMAKDPEA AFFKRLEGLQ PCEVSQLNAG THIFAVYGDN FFKPASYTIE ALCAKTYEDT THNLQDIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYS QEKQSVEELL KQRDTIHSSF TVTRTVATLS GSGSGHFSNG SSSKPSGDDS KPDSPGDDSS SDSKDKYAKR
401: KWFNLNLKGS EKK

Best Arabidopsis Sequence Match ( AT1G68370.1 )
(BLAST)

001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG

Arabidopsis Description

ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.