CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44905	Canola	nucleus	95.95	98.29
CDY59029	Canola	nucleus	90.24	92.44
CDX96027	Canola	nucleus	90.24	92.44
KRH35922	Soybean	nucleus	81.19	83.17
KRG90857	Soybean	nucleus	80.71	82.68
VIT_01s0011g03790.t01	Wine grape	nucleus	81.43	82.41
PGSC0003DMT400037773	Potato	cytosol	80.48	81.84
Solyc05g009160.2.1	Tomato	nucleus	80.0	81.36
Solyc04g007370.2.1	Tomato	cytosol	79.29	80.43
PGSC0003DMT400015325	Potato	cytosol	70.0	80.33
Os01t0512100-01	Rice	plasma membrane	74.76	77.92
TraesCS3A01G202200.1	Wheat	cytosol	75.48	77.7
TraesCS3D01G201400.2	Wheat	cytosol	75.48	77.7
GSMUA_Achr8P31640_001	Banana	cytosol	75.48	77.7
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	74.52	76.9
EES16141	Sorghum	nucleus	74.52	76.72
HORVU3Hr1G042500.2	Barley	plastid	74.76	67.24
CDY24259	Canola	cytosol	7.14	61.22
CDY65889	Canola	cytosol	13.1	60.44
CDY50519	Canola	nucleus	53.57	55.28
CDY60793	Canola	nucleus	55.95	54.4
CDY16243	Canola	nucleus	56.19	54.0
CDY45159	Canola	cytosol	48.33	49.15
CDY30918	Canola	cytosol	47.86	48.79
CDY50516	Canola	nucleus	39.29	46.88
CDY68909	Canola	nucleus	20.71	43.72
CDY71746	Canola	endoplasmic reticulum, extracellular	21.19	42.58
CDY34584	Canola	extracellular, mitochondrion, plasma membrane, vacuole	21.19	36.18
CDY71923	Canola	cytosol	8.81	34.91
CDX70703	Canola	cytosol	10.0	33.33
CDX78701	Canola	cytosol	10.0	33.33
CDY62617	Canola	extracellular	15.71	33.0
CDY49645	Canola	cytosol	9.76	32.8
CDX69435	Canola	cytosol	9.76	32.8
CDY27949	Canola	cytosol	9.05	31.15
CDY17195	Canola	cytosol	9.05	31.15
CDY37476	Canola	extracellular, plasma membrane	16.43	29.74
CDY53751	Canola	cytosol	10.24	27.39
CDY33230	Canola	endoplasmic reticulum, extracellular	10.48	24.72
Os03t0262500-01	Rice	plasma membrane, plastid	7.14	16.04
CDX92921	Canola	extracellular, plasma membrane	7.38	15.35
CDY24260	Canola	plastid	8.33	13.94

Protein Annotations

EnsemblPlants:CDX81506	EnsemblPlantsGene:GSBRNA2T00135144001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ProteinID:CDX81506	ProteinID:CDX81506.1	ScanProsite:PS00636	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0004EE14DC	MapMan:26.3.1.3	:	:	:

Description

BnaC02g18100D

Coordinates

chrLK031825:-:538938..541165

Molecular Weight (calculated)

46341.3 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.530

Length

420 amino acids

Sequence
(BLAST)

001: MSSKKAGGSS SPATRRDPYE VLSVSRTASD QEIKSSYRKL ALKYHPDKNA NNPDASELFK EVAYSYSILS DPEKRRQYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT SVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSAAQ SKFKLLYFEQ DSSGGYGLAL
201: QEESEKTGKV TSAGMYFLHF QVYRMDSTIN ALAVAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TENLKEIEAQ
301: ILRKRNDLRQ FETEPYIIMT LLYSFRNALT RFQEVTNRYT QEKQTVDELL KQRDSIHSSF SVVKTPSGSN LSNGSSSKAQ GDESKGDGAS VGEEGGSESR
401: DKSKRKWFNL NLKGSDKKVG

Best Arabidopsis Sequence Match ( AT1G68370.1 )
(BLAST)

001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG

Arabidopsis Description

ATJ15At1g68370 [Source:UniProtKB/TrEMBL;Acc:Q1H5A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.