Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016320.1-P | Field mustard | plastid | 94.97 | 49.35 |
| CDY50516 | Canola | nucleus | 82.41 | 46.59 |
| CDY50519 | Canola | nucleus | 81.91 | 40.05 |
| CDY16243 | Canola | nucleus | 83.92 | 38.22 |
| CDY60793 | Canola | nucleus | 82.91 | 38.19 |
| VIT_01s0026g00840.t01 | Wine grape | cytosol | 55.28 | 26.96 |
| Solyc05g006240.2.1 | Tomato | nucleus | 55.28 | 26.38 |
| PGSC0003DMT400040316 | Potato | nucleus | 54.27 | 26.21 |
| KRH69469 | Soybean | nucleus | 52.76 | 25.42 |
| KRH74687 | Soybean | nucleus | 52.26 | 25.37 |
| CDY45159 | Canola | cytosol | 47.74 | 23.0 |
| CDY30918 | Canola | cytosol | 46.73 | 22.57 |
| CDY44905 | Canola | nucleus | 44.22 | 21.46 |
| CDX96027 | Canola | nucleus | 42.71 | 20.73 |
| CDY59029 | Canola | nucleus | 42.71 | 20.73 |
| CDX81506 | Canola | nucleus | 43.72 | 20.71 |
| CDY24260 | Canola | plastid | 6.03 | 4.78 |
| CDX92921 | Canola | extracellular, plasma membrane | 3.52 | 3.47 |
| CDX69435 | Canola | cytosol | 2.01 | 3.2 |
| CDY49645 | Canola | cytosol | 2.01 | 3.2 |
| CDY71923 | Canola | cytosol | 1.51 | 2.83 |
| CDY53751 | Canola | cytosol | 2.01 | 2.55 |
| CDY27949 | Canola | cytosol | 1.51 | 2.46 |
| CDX78701 | Canola | cytosol | 1.51 | 2.38 |
| CDX70703 | Canola | cytosol | 1.51 | 2.38 |
| CDY24259 | Canola | cytosol | 0.5 | 2.04 |
| CDY17195 | Canola | cytosol | 1.01 | 1.64 |
| CDY33230 | Canola | endoplasmic reticulum, extracellular | 1.01 | 1.12 |
| CDY62617 | Canola | extracellular | 0.0 | 0.0 |
| CDY65889 | Canola | cytosol | 0.0 | 0.0 |
| CDY71746 | Canola | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
| CDY37476 | Canola | extracellular, plasma membrane | 0.0 | 0.0 |
| CDY34584 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY68909 | EnsemblPlantsGene:GSBRNA2T00081003001 | ncoils:Coil | PANTHER:PTHR44272 | PANTHER:PTHR44272:SF2 | ProteinID:CDY68909 |
| ProteinID:CDY68909.1 | SEG:seg | UniParc:UPI0004EEC6DC | UniProt:A0A078JQ41 | MapMan:26.3.1.3 | : |
Description
BnaAnng28740DBnaAnng28740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ41]
Coordinates
chrLK038246:-:2423..3336
Molecular Weight (calculated)
23154.3 Da
IEP (calculated)
5.785
GRAVY (calculated)
-0.799
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MYFLGFPVYS LDHTITSMAQ EKNPETALFK SLDGFQQCEV TELKAGTHIF AVYGDNFFKS VSYTIQVLCA ASFTQEKEDL RSVEAQILNK RAELAKFETE
101: YREIDELLKQ RNEIHSAYTT VPLIERSSNK NRLRKSLFKK AVAEAPAPIV QEEEEEEEEE ESSRQRNKKP NTCDDESETL KKKTRWYNLH LKLDKKKPC
101: YREIDELLKQ RNEIHSAYTT VPLIERSSNK NRLRKSLFKK AVAEAPAPIV QEEEEEEEEE ESSRQRNKKP NTCDDESETL KKKTRWYNLH LKLDKKKPC
001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC
Arabidopsis Description
ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.