CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	EER88769	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037257_P001	Maize	cytosol	93.02	97.41
TraesCS7D01G196200.1	Wheat	cytosol	82.88	84.21
TraesCS7B01G100200.1	Wheat	cytosol	82.43	83.75
TraesCS7A01G194600.1	Wheat	cytosol	82.43	83.75
HORVU7Hr1G039640.19	Barley	cytosol	79.05	79.59
EES07283	Sorghum	nucleus	78.6	78.96
GSMUA_Achr3P06010_001	Banana	cytosol	69.82	73.81
PGSC0003DMT400040316	Potato	nucleus	65.77	70.87
Solyc05g006240.2.1	Tomato	nucleus	65.77	70.02
VIT_01s0026g00840.t01	Wine grape	cytosol	63.29	68.87
KRH69469	Soybean	nucleus	62.16	66.83
KRH74687	Soybean	nucleus	61.04	66.1
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	66.44	57.62
AT1G59980.1	Thale cress	nucleus	53.6	57.49
CDY30918	Canola	cytosol	52.7	56.8
CDY45159	Canola	cytosol	52.7	56.66
Bra027824.1-P	Field mustard	nucleus	52.25	56.04
TraesCS7B01G498100.1	Wheat	cytosol	52.03	55.4
EES16141	Sorghum	nucleus	50.9	55.39
EES05690	Sorghum	cytosol	10.81	39.34
EES07561	Sorghum	cytosol	9.23	31.54

Protein Annotations

Gene3D:1.10.287.110	MapMan:26.3.1.3	EntrezGene:8061480	UniProt:C5Z7H9	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EnsemblPlants:EER89501	ProteinID:EER89501	ProteinID:EER89501.1	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44272
PANTHER:PTHR44272:SF1	SMART:SM00271	EnsemblPlantsGene:SORBI_3010G098600	SUPFAM:SSF46565	unigene:Sbi.20633	UniParc:UPI0001A89954
RefSeq:XP_002438134.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:8891366..8896554

Molecular Weight (calculated)

49659.5 Da

IEP (calculated)

8.959

GRAVY (calculated)

-0.657

Length

444 amino acids

Sequence
(BLAST)

001: MAGSRFGSFK SEKGDSASAA AGAGADGAAQ RRDPYEVLGV GRTATDQEIK SAFRRMALKY HPDKNGDDPV ASDKFQEVTF SYNILSDPDK RRQYDTSGFD
101: AIESDSQELE LDLSSLNTVN TVFAALFSKL GVPIKTTVSA TVLEEALNGS VMVSQLQLGN SVQRKVEKQS AHFYSVDITE KQAKMGLVCR VHSNDKSKFK
201: LLYFELEENG GLSLALQEDS VKVGKVTAAG MYFLGFPVYR FEQNNLAAAA KDSDGAFFKR LDSFQPCDIH ELKPGTHFFA VYGDNFFKTA SYTIEVVCGE
301: SFPAEKEMLR NVEAKILTKR AELSKFESEY REVLAKFTEM TSKYTQEMQA IDDLLKERNE IHASYTNNPP LKRSSSRNKG KSPSKVAKTD TEKQPQKEKK
401: VKDHCMAGYG SDSDNSKSEK KSKERFPRKK WLNIPFKLDR RKTC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.