Factsheet for TraesCS7B01G100200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G492400.1
TraesCS7B01G398100.1
TraesCS7D01G478800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	TraesCS7A01G492400.1	AT5G57090.1	18047472
AT1G59980.1	TraesCS7B01G398100.1	AT5G57090.1	18047472
AT1G59980.1	TraesCS7D01G478800.1	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G196200.1	Wheat	cytosol	99.54	99.54
TraesCS7A01G194600.1	Wheat	cytosol	97.94	97.94
HORVU7Hr1G039640.19	Barley	cytosol	91.53	90.7
Zm00001d037257_P001	Maize	cytosol	80.09	82.55
EER89501	Sorghum	cytosol	83.75	82.43
TraesCS6B01G340100.1	Wheat	nucleus	78.26	77.03
GSMUA_Achr3P06010_001	Banana	cytosol	69.34	72.14
PGSC0003DMT400040316	Potato	nucleus	65.68	69.66
Solyc05g006240.2.1	Tomato	nucleus	65.9	69.06
VIT_01s0026g00840.t01	Wine grape	cytosol	63.16	67.65
KRH69469	Soybean	nucleus	62.7	66.34
KRH74687	Soybean	nucleus	61.56	65.61
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	67.28	57.42
AT1G59980.1	Thale cress	nucleus	53.55	56.52
CDY30918	Canola	cytosol	52.4	55.58
CDY45159	Canola	cytosol	52.4	55.45
Bra027824.1-P	Field mustard	nucleus	51.95	54.83
TraesCS7B01G498100.1	Wheat	cytosol	52.17	54.68
TraesCS6B01G344500.1	Wheat	cytosol	8.7	29.23

Protein Annotations

EnsemblPlants:TraesCS7B01G100200.1	EnsemblPlantsGene:TraesCS7B01G100200	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR44272	PANTHER:PTHR44272:SF1	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565
TIGR:cd06257	MapMan:26.3.1.3	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:114500400..114505285

Molecular Weight (calculated)

49394.1 Da

IEP (calculated)

8.411

GRAVY (calculated)

-0.708

Length

437 amino acids

Sequence
(BLAST)

001: MAGSRFGSFK SDKGDSAAAA AAPPQRKDPY EVLGVARTAT DQEIKSAFRR MALKYHPDKN ADDPVASDKF QEVTFSYSIL SDPHKRRQYD TSGFEAIETD
101: SQELELDLSS LNTVNTMFAA IFSKLGVPIK TTVSATVLEE ALNGSIVVSQ LQLGNPVRKK VEKQTAHFYS VDITEQEAKK GLVCRVHSTE KSKFKLLYFE
201: LEENGGLSLA LQEDSVKASK VSSAGMYFLG FPVYRFEQNN SAPAAKDPDS AFFKRLDSFQ PCDINELKPG THFFAVYGDN FFKSATYTIE IVCAESFPTE
301: KEKLQSVEAK ILTKRAELSK FETEYREVLA KFTEMTSKYT QEMQTIDELL NERNVIHASY TNNPPLKRTS SRNKSKSSPS FKFDEEKNQR KEKKVKDQHM
401: EGCGSEDDDS SEKKTKERSA RKRWLNIPFK VDRRKPC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.