Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- endoplasmic reticulum 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P15720_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G59980.1 | GSMUA_Achr1P15720_001 | AT5G57090.1 | 18047472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06010_001 | Banana | cytosol | 72.27 | 88.1 |
| PGSC0003DMT400040316 | Potato | nucleus | 58.01 | 72.09 |
| VIT_01s0026g00840.t01 | Wine grape | cytosol | 57.03 | 71.57 |
| Solyc05g006240.2.1 | Tomato | nucleus | 57.81 | 70.98 |
| EES07283 | Sorghum | nucleus | 60.55 | 70.14 |
| Os02t0741100-01 | Rice | nucleus | 60.35 | 69.91 |
| KRH69469 | Soybean | nucleus | 55.86 | 69.25 |
| TraesCS6D01G289600.1 | Wheat | nucleus | 59.96 | 69.14 |
| TraesCS6B01G340100.1 | Wheat | nucleus | 59.96 | 69.14 |
| KRH74687 | Soybean | nucleus | 55.27 | 69.02 |
| HORVU6Hr1G076490.9 | Barley | nucleus | 59.38 | 68.93 |
| Zm00001d017995_P003 | Maize | nucleus | 60.35 | 68.82 |
| TraesCS6A01G310200.1 | Wheat | nucleus | 59.57 | 68.69 |
| TraesCS7D01G196200.1 | Wheat | cytosol | 57.42 | 67.28 |
| TraesCS7B01G100200.1 | Wheat | cytosol | 57.42 | 67.28 |
| TraesCS7A01G194600.1 | Wheat | cytosol | 57.03 | 66.82 |
| EER89501 | Sorghum | cytosol | 57.62 | 66.44 |
| Zm00001d037257_P001 | Maize | cytosol | 54.69 | 66.04 |
| HORVU7Hr1G039640.19 | Barley | cytosol | 55.08 | 63.95 |
| CDY45159 | Canola | cytosol | 47.46 | 58.84 |
| AT1G59980.1 | Thale cress | nucleus | 47.46 | 58.7 |
| Bra027824.1-P | Field mustard | nucleus | 47.46 | 58.7 |
| CDY30918 | Canola | cytosol | 47.07 | 58.5 |
| GSMUA_Achr8P31640_001 | Banana | cytosol | 46.29 | 58.09 |
| GSMUA_Achr4P13770_001 | Banana | cytosol | 44.53 | 56.16 |
| TraesCS7B01G498100.1 | Wheat | cytosol | 41.6 | 51.08 |
| GSMUA_Achr4P06780_001 | Banana | cytosol | 4.88 | 46.3 |
| GSMUA_Achr2P12110_001 | Banana | cytosol | 8.98 | 38.33 |
| GSMUA_Achr9P21410_001 | Banana | nucleus | 43.75 | 36.84 |
| GSMUA_Achr10P... | Banana | cytosol | 8.59 | 33.33 |
| GSMUA_Achr7P10040_001 | Banana | cytosol | 2.93 | 23.08 |
| GSMUA_Achr9P15090_001 | Banana | cytosol | 4.3 | 22.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P14460_001 | EnsemblPlants:GSMUA_Achr9T14460_001 | EnsemblPlantsGene:GSMUA_Achr9G14460_001 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
| InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | ncoils:Coil | PANTHER:PTHR44272 | PANTHER:PTHR44272:SF2 |
| PFAM:PF00226 | PFscan:PS50076 | PRINTS:PR00625 | ScanProsite:PS00636 | SEG:seg | SMART:SM00271 |
| SUPFAM:SSF46565 | UniParc:UPI0002948B95 | UniProt:M0U0A4 | MapMan:26.3.1.3 | : | : |
Description
Chaperone protein dnaJ 16 [Source:GMGC_GENE;Acc:GSMUA_Achr9G14460_001]
Coordinates
chr9:+:9402323..9407494
Molecular Weight (calculated)
58009.3 Da
IEP (calculated)
8.343
GRAVY (calculated)
-0.434
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAPGFPSSR SERREDANKK QQQRRDPYEV LGVSRNATEQ EIKSAYRRMA LKYHPDKNAN DPIAADTFKE VTFSYNILSD PDKRHQYDTS GFEAIESVSQ
101: ELEVDLSNLG TVNTMFAALC SKLGVQIKTT VSATVLEEAL NGTVIVSPLP LGQLIARKVE KQSAHFYSVE ITEREAQMGV VCRVCSAEKS KFKLLYFEQE
201: ENGLGLALQV SLLFGAVVST VVSIISKCPV EHLIHHHNGC YTILLSGISI FPSYHYIAKS NPICLSNLQN TLNYKGLPCS YLFLEIWCPT VISDLQRNNF
301: REDSIKTGKV TSAGMFFLRF PVYRFDQSQS VAIAKDPDAK FFKKLDGFQA CEVNELRAGT HTFAVYGDNF FKSVSYTIEV MCAEQFSAEK EKLQDVEAKI
401: LTKRAELSKF ETEYREVLAR FTEMTSRYAQ EMQSIDELLK ERNAIHASYT IIPPLKQNSS SSKMSSAFNG SNGEEECPTK EKKSKDEKKC RDPTKRKKWF
501: KIHLKMDKRK PC
101: ELEVDLSNLG TVNTMFAALC SKLGVQIKTT VSATVLEEAL NGTVIVSPLP LGQLIARKVE KQSAHFYSVE ITEREAQMGV VCRVCSAEKS KFKLLYFEQE
201: ENGLGLALQV SLLFGAVVST VVSIISKCPV EHLIHHHNGC YTILLSGISI FPSYHYIAKS NPICLSNLQN TLNYKGLPCS YLFLEIWCPT VISDLQRNNF
301: REDSIKTGKV TSAGMFFLRF PVYRFDQSQS VAIAKDPDAK FFKKLDGFQA CEVNELRAGT HTFAVYGDNF FKSVSYTIEV MCAEQFSAEK EKLQDVEAKI
401: LTKRAELSKF ETEYREVLAR FTEMTSRYAQ EMQSIDELLK ERNAIHASYT IIPPLKQNSS SSKMSSAFNG SNGEEECPTK EKKSKDEKKC RDPTKRKKWF
501: KIHLKMDKRK PC
001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC
Arabidopsis Description
ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.