Factsheet for TraesCS6D01G289600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G492400.1
TraesCS7B01G398100.1
TraesCS7D01G478800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	TraesCS7A01G492400.1	AT5G57090.1	18047472
AT1G59980.1	TraesCS7B01G398100.1	AT5G57090.1	18047472
AT1G59980.1	TraesCS7D01G478800.1	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G340100.1	Wheat	nucleus	99.1	99.1
HORVU6Hr1G076490.9	Barley	nucleus	98.42	99.09
TraesCS6A01G310200.1	Wheat	nucleus	98.65	98.65
Os02t0741100-01	Rice	nucleus	89.64	90.05
EES07283	Sorghum	nucleus	89.64	90.05
Zm00001d017995_P003	Maize	nucleus	88.74	87.75
TraesCS7D01G196200.1	Wheat	cytosol	77.03	78.26
GSMUA_Achr3P06010_001	Banana	cytosol	72.07	76.19
PGSC0003DMT400040316	Potato	nucleus	67.12	72.33
Solyc05g006240.2.1	Tomato	nucleus	66.89	71.22
VIT_01s0026g00840.t01	Wine grape	cytosol	63.96	69.61
KRH69469	Soybean	nucleus	64.19	69.01
KRH74687	Soybean	nucleus	63.29	68.54
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	69.14	59.96
AT1G59980.1	Thale cress	nucleus	54.5	58.45
CDY30918	Canola	cytosol	53.6	57.77
CDY45159	Canola	cytosol	53.6	57.63
Bra027824.1-P	Field mustard	nucleus	53.15	57.0
TraesCS3D01G201400.2	Wheat	cytosol	52.03	56.62
TraesCS6D01G250300.1	Wheat	cytosol	9.91	36.36
TraesCS6D01G293800.1	Wheat	cytosol	9.23	31.3

Protein Annotations

Gene3D:1.10.287.110	MapMan:26.3.1.3	ncoils:Coil	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR44272	PANTHER:PTHR44272:SF1	SMART:SM00271	SUPFAM:SSF46565	EnsemblPlantsGene:TraesCS6D01G289600	EnsemblPlants:TraesCS6D01G289600.1
TIGR:cd06257	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:400546008..400550173

Molecular Weight (calculated)

49630.1 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.711

Length

444 amino acids

Sequence
(BLAST)

001: MAGPKFGSFK SENKGDSAAS AAGAAAQRRD PYEVLGVGRN ATEQEIKSAF RRMALKYHPD KNADDPVASE KFQEATFSYN ILSDPDKRRQ YDSSGFEAIE
101: ADSHELELDL SSLNTVNTMF AALFSKLGVP IKTTVSATVL EEALNGSVEI AQLHLGKSVC RKVEKQSAHF YSVDITEEEA KLGLVCRVCS TAKSKFKLLY
201: FEPEENGGLS LALQEDSAKT GKVTSAGMFF LGFPVYRFEH NNSAAAAKDP DSAFFKRLDG FQPCEVNELK EGTHYFAVYG DNFFKSATYT LEVVCAEPFS
301: NEKEKLRSVE AKILAKRSEL SKFESEYREV LAKFTEMTSR YAQEMQTIDE LLNERNAIHA SYTNSPTLKR SSSDSKGKTS SKGSKSDDDQ SVRKEKKSKS
401: PTTMEASASD EEGPNKKEKK PKERLRRKRW FNIHHLKVDK RRPC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.