Factsheet for Zm00001d017995_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d046893_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	Zm00001d046893_P001	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07283	Sorghum	nucleus	95.99	97.51
Os02t0741100-01	Rice	nucleus	87.97	89.37
TraesCS6D01G289600.1	Wheat	nucleus	87.75	88.74
HORVU6Hr1G076490.9	Barley	nucleus	87.08	88.66
TraesCS6B01G340100.1	Wheat	nucleus	87.31	88.29
TraesCS6A01G310200.1	Wheat	nucleus	87.31	88.29
Zm00001d037257_P001	Maize	cytosol	72.83	77.12
GSMUA_Achr3P06010_001	Banana	cytosol	70.6	75.48
PGSC0003DMT400040316	Potato	nucleus	65.7	71.6
Solyc05g006240.2.1	Tomato	nucleus	65.7	70.74
VIT_01s0026g00840.t01	Wine grape	cytosol	61.92	68.14
KRH69469	Soybean	nucleus	62.14	67.55
KRH74687	Soybean	nucleus	61.25	67.07
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	68.82	60.35
AT1G59980.1	Thale cress	nucleus	52.78	57.25
CDY30918	Canola	cytosol	51.45	56.07
CDY45159	Canola	cytosol	51.45	55.93
Bra027824.1-P	Field mustard	nucleus	51.0	55.31
Zm00001d041627_P002	Maize	mitochondrion, plasma membrane	49.67	54.79
Zm00001d017685_P006	Maize	cytosol	10.47	33.33
Zm00001d018131_P004	Maize	cytosol	9.35	29.17

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100382440	MapMan:26.3.1.3	UniProt:A0A1D6HJU8	ProteinID:AQK74739.1	ncoils:Coil
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44272	PANTHER:PTHR44272:SF1	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI000844A5CD	EnsemblPlantsGene:Zm00001d017995	EnsemblPlants:Zm00001d017995_P003	EnsemblPlants:Zm00001d017995_T003	SEG:seg

Description

Chaperone protein dnaJ 16

Coordinates

chr5:+:211635631..211640602

Molecular Weight (calculated)

50036.7 Da

IEP (calculated)

8.925

GRAVY (calculated)

-0.674

Length

449 amino acids

Sequence
(BLAST)

001: MAGPKFGSFK AEKGDSAAAA GAAAQRRDPY EVLGVGRNAT EQEIKSAFRR MALKYHPDKN SDDPVASEKF QEATFSYNIL SDPDKRRQYD ASGFEAIEAD
101: SQELELDLSS LNTVNTVFAA LFSKLGVPIK TTVSATVLEE ALNGSVEISQ LQLGKSLCRK VEKQSAHFYS VDITDKEAKM GLVCRVHSTS KSKFKLLYFE
201: LEDNGGLSLA LQLTSISLVQ EDSAKTGKVT SAGMFFLGFP VYRFEQNNSA AAAKDPDSAF FKRLDGFQPC EVNELKAGSH YFAVYGDNFF KSASYTIEVV
301: SAEPFSAQKE KLRSVEAKII AKRSELSKFE SEYREVLAKF TEMTSRYAQE MQTIDDLLKE RNAIHASYTN NPTLQRSSSS SKGKSPSKGS RSEDDQTVKK
401: EKKSKSQPME GSKSDDEGPE NKKEETPKDR IRRKKWFNIH LKVDKRRPC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.