CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88769

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59980.1	EER88769	AT5G57090.1	18047472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017995_P003	Maize	nucleus	97.51	95.99
Os02t0741100-01	Rice	nucleus	90.27	90.27
TraesCS6D01G289600.1	Wheat	nucleus	90.05	89.64
HORVU6Hr1G076490.9	Barley	nucleus	89.37	89.57
TraesCS6A01G310200.1	Wheat	nucleus	89.59	89.19
TraesCS6B01G340100.1	Wheat	nucleus	89.59	89.19
EER89501	Sorghum	cytosol	78.96	78.6
GSMUA_Achr3P06010_001	Banana	cytosol	73.08	76.9
PGSC0003DMT400040316	Potato	nucleus	67.65	72.57
Solyc05g006240.2.1	Tomato	nucleus	67.65	71.7
KRH69469	Soybean	nucleus	64.25	68.77
VIT_01s0026g00840.t01	Wine grape	cytosol	63.12	68.38
KRH74687	Soybean	nucleus	63.35	68.29
GSMUA_Achr9P14460_001	Banana	cytosol, nucleus, plastid	70.14	60.55
AT1G59980.1	Thale cress	nucleus	53.39	57.0
EES16141	Sorghum	nucleus	52.04	56.37
CDY30918	Canola	cytosol	52.49	56.31
CDY45159	Canola	cytosol	52.49	56.17
Bra027824.1-P	Field mustard	nucleus	52.04	55.56
EES05690	Sorghum	cytosol	10.41	37.7
EES07561	Sorghum	cytosol	9.5	32.31

Protein Annotations

Gene3D:1.10.287.110	MapMan:26.3.1.3	EntrezGene:8068599	UniProt:C5XZ63	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	EnsemblPlants:EES07283	ProteinID:EES07283	ProteinID:EES07283.1	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	ProteinID:KXG30788.1	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR44272	PANTHER:PTHR44272:SF1	SMART:SM00271	EnsemblPlantsGene:SORBI_3004G242700	SUPFAM:SSF46565	unigene:Sbi.7732
UniParc:UPI0001A85A21	RefSeq:XP_002454307.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:59080797..59085583

Molecular Weight (calculated)

49353.1 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.703

Length

442 amino acids

Sequence
(BLAST)

001: MAGPKFGSFK AEKGDSAAAA GAAVQRRDPY EVLGVGRNAT EQEIKSAFRR MALKYHPDKN SDDPVASEKF QEATFSYNIL SDPDKRRQYD ASGFEAIEAD
101: SQELELDLSS LNTVNTVFAA LFSKLGVPIK TTVSATVLEE ALNGSVEISQ LQLGKSLCRK VEKQSAHFYS VDITDKEAKM GLVCRVHSTS KSKFKLLYFE
201: LEDNGGLSLA LQEDSAKTGK VTSAGMFFLG FPVYRFEQNN SAAAAAKDPD SAFFKRLDGF QPCEVNELKA GTHYFAVYGD NFFKSASYTI EVVCAEPFSD
301: QKEKLRSVEA KIIAKRSELS KFESEYREVL AKFTEMTSRY AQEMQTIDEL LKERNAIHAS YTNNPTLQRS SSSSKGKSPS KGSKSEDDQT VKKEKKSKSQ
401: PMEGSKSDDE GPKNKKEKKP KDRIRRKKWF NIHLKVDKRR AC

Best Arabidopsis Sequence Match ( AT1G24120.1 )
(BLAST)

001: MPGHRSKSEK KDADKQLRRD PYEVLGVLRN STDQEIKSAY RKLALKYHPD KTANDPVAAD MFKEVTFSYN ILSDPEKRRQ FDSAGFEAVE AESQELELDL
101: SSLGAVNTVF AALFSKLGVP IKTSVSATIL EEALNGRVSV DPLVLGQAVS KKVEKQCAHF YAVTISEEEV SAGLVCRVES SSKSKFKLLY FDQEANSGLS
201: LALQEDSKRT GKITSAGMYF LGFPVYRLDH TINSMAQAKD PETAFFKKLD GFQQCEVTEL KAGTHVFAVY GDNFFKNVSY TIQVLCAAAF TQEKEDLRSV
301: EAQILTKRAE LAKFETEYRE VLVQFTDMTS RYAQEMQSID ELLKQRNEIH SAYTTIPLMK RSSSKNRMRK SSFKKAAAKA PAPTEQEEEE EEEEEEEEES
401: SRQKNKKPST CDKSETLKKK SKWFNLHLKL DKKKPC

Arabidopsis Description

ATJ16Chaperone protein dnaJ 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.