Factsheet for GSMUA_Achr1P15720_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P06010_001
GSMUA_Achr4P04430_001
GSMUA_Achr4P09980_001
GSMUA_Achr4P12130_001
GSMUA_Achr5P02480_001
GSMUA_Achr7P01120_001
GSMUA_Achr8P24160_001
GSMUA_Achr9P14460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	GSMUA_Achr3P06010_001	AT1G59980.1	18047472
AT5G57090.1	GSMUA_Achr9P14460_001	AT1G59980.1	18047472
AT5G57090.1	GSMUA_Achr5P02480_001	AT2G34650.1	17889649
AT5G57090.1	GSMUA_Achr7P01120_001	AT2G34650.1	17889649
AT5G57090.1	GSMUA_Achr4P04430_001	AT2G36910.1	17237354
AT5G57090.1	GSMUA_Achr4P12130_001	AT2G36910.1	17237354
AT5G57090.1	GSMUA_Achr4P09980_001	AT3G28860.1	17237354
AT5G57090.1	GSMUA_Achr8P24160_001	AT3G28860.1	17237354
AT5G57090.1	GSMUA_Achr10P...	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88769	Sorghum	plasma membrane	78.17	64.06
Os06t0660200-01	Rice	plasma membrane	78.56	63.97
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	77.97	63.29
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	77.97	63.29
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	77.97	63.19
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	77.97	63.09
KRH19119	Soybean	endoplasmic reticulum	78.36	62.62
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	77.58	62.58
KRH02749	Soybean	plasma membrane	77.39	62.32
VIT_11s0052g00440.t01	Wine grape	plasma membrane	75.44	61.43
Solyc07g006900.1.1	Tomato	plasma membrane	75.05	61.01
PGSC0003DMT400048251	Potato	plasma membrane	75.05	61.01
CDY11886	Canola	plasma membrane	73.49	60.9
GSMUA_Achr8P23120_001	Banana	plasma membrane	59.06	60.12
CDY20694	Canola	plasma membrane	74.27	60.0
GSMUA_Achr9P15520_001	Banana	plasma membrane	46.39	59.95
CDY38263	Canola	plasma membrane	67.45	59.86
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	75.24	59.66
GSMUA_Achr8P09440_001	Banana	plasma membrane	63.16	59.34
CDY69709	Canola	plasma membrane	69.98	59.24
GSMUA_Achr2P00910_001	Banana	golgi, plasma membrane, vacuole	63.55	58.53
Bra002763.1-P	Field mustard	plasma membrane	67.64	58.32
Bra006834.1-P	Field mustard	plasma membrane	72.9	58.26
GSMUA_Achr8P29780_001	Banana	golgi, plasma membrane, vacuole	54.78	58.06
CDX88606	Canola	plasma membrane	72.71	58.01
Bra035648.1-P	Field mustard	plasma membrane	74.66	57.94
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	63.55	57.29
CDY53978	Canola	plasma membrane	66.28	57.05
GSMUA_Achr4P00310_001	Banana	golgi, plasma membrane, vacuole	34.11	57.0
GSMUA_Achr9P27160_001	Banana	plasma membrane	61.01	56.81
GSMUA_Achr3P07280_001	Banana	plasma membrane	63.74	55.9
GSMUA_Achr7P17140_001	Banana	plasma membrane	60.62	53.44
GSMUA_Achr1P25190_001	Banana	golgi, plasma membrane, vacuole	61.6	52.06
GSMUA_Achr11P...	Banana	golgi, plasma membrane, vacuole	32.55	51.38
GSMUA_Achr11P...	Banana	extracellular, plasma membrane, vacuole	31.19	49.84
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, vacuole	34.89	49.04
GSMUA_Achr5P25220_001	Banana	golgi, plasma membrane, vacuole	30.21	47.55
GSMUA_Achr3P22010_001	Banana	plasma membrane	46.78	47.34
GSMUA_Achr5P25210_001	Banana	extracellular, golgi, vacuole	29.82	46.93
GSMUA_Achr8P08300_001	Banana	plasma membrane	49.9	44.76
GSMUA_Achr5P25200_001	Banana	cytosol, extracellular, plasma membrane	10.33	33.76

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	GO:GO:0000323	GO:GO:0001666	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733
GO:GO:0009734	GO:GO:0009749	GO:GO:0009921	GO:GO:0009925	GO:GO:0009926	GO:GO:0009958
GO:GO:0009987	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSMUA_Achr1G15720_001	EnsemblPlants:GSMUA_Achr1P15720_001	EnsemblPlants:GSMUA_Achr1T15720_001	UniProt:M0S080	InterPro:Mem_trans	PFAM:PF03547
InterPro:PIN2	PANTHER:PTHR31752	PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI00029599B8
SEG:seg	:	:	:	:	:

Description

Probable auxin efflux carrier component 2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G15720_001]

Coordinates

chr1:-:11787756..11790605

Molecular Weight (calculated)

55548.1 Da

IEP (calculated)

10.237

GRAVY (calculated)

0.362

Length

513 amino acids

Sequence
(BLAST)

001: MITGKDIYDV LAAVVPLYVA MILAYGSVRW WKIFTPNQCS GINRFVAVFA VPLLSFHFIS TNNIYAMNFH FIAADSLQKV VILVALFLWH NLSRRGSLDW
101: SITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVMQ SVIWYTLMLF LFEYRGAKAL ISEQKSSSSI ARSMASSYNK SHGLNSMTSM TPRASNLTGV
201: EIYSLQSSRD PTPRASSFNQ TDFYAMFSSK VTSPRAAGGA KEGAAAAANG NKELHMFVWS SSASPGSEAN LRNIVNRAAS TEFGIVDPPK AAAHFQENPT
301: PKGSVHATSG NASPTKKAGA AASGELDMED GRKSHGGKFP TNTHRMPPAS VMTRLIVIMV WRKLIRNPNT YSSLIGLIWS LVSYRWNIEM PTIIKGSISI
401: LSDAGLGMAM FSLGLFMALQ PKIISCGKSV AAFSMAVRFL TGPAVIAATS IAIGVRGVLL HVAIVQAALP QGIVPFVFAK EYNCHPDILS TAVIFGMLIA
501: LPITILYYVL LGV

Best Arabidopsis Sequence Match ( AT1G23080.1 )
(BLAST)

001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL

Arabidopsis Description

PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.