Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr1P15720_001 | |
GSMUA_Achr6P12690_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G36910.1 | GSMUA_Achr6P12690_001 | AT3G21640.1 | 14517332 |
AT2G36910.1 | GSMUA_Achr1P15720_001 | AT5G57090.1 | 17237354 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr4P04430_001 | Banana | cytosol, peroxisome, plasma membrane | 85.82 | 85.31 |
TraesCS7A01G284900.1 | Wheat | plasma membrane | 73.72 | 79.69 |
AT2G36910.1 | Thale cress | peroxisome | 73.27 | 76.75 |
KRG96023 | Soybean | cytosol, peroxisome, plasma membrane | 75.95 | 76.4 |
VIT_08s0007g05060.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 76.61 | 76.22 |
Solyc09g008240.2.1 | Tomato | peroxisome | 74.31 | 76.18 |
PGSC0003DMT400009924 | Potato | peroxisome | 75.35 | 76.14 |
KRH67730 | Soybean | cytosol, peroxisome, plasma membrane | 75.8 | 76.08 |
TraesCS7B01G181700.1 | Wheat | cytosol | 77.06 | 75.88 |
KRH32507 | Soybean | cytosol, nucleus, plasma membrane | 75.5 | 75.73 |
TraesCS7D01G284100.1 | Wheat | cytosol | 77.21 | 75.64 |
KRH19897 | Soybean | cytosol, peroxisome, plasma membrane | 75.06 | 75.39 |
CDY46744 | Canola | cytosol, peroxisome, plasma membrane | 74.68 | 75.19 |
Os08t0564300-04 | Rice | plasma membrane | 74.98 | 75.15 |
Bra023087.1-P | Field mustard | cytosol, nucleus, plasma membrane | 74.68 | 75.13 |
CDX79704 | Canola | plasma membrane | 74.61 | 74.94 |
Bra017216.1-P | Field mustard | cytosol, nucleus, plasma membrane | 73.94 | 74.44 |
HORVU7Hr1G063020.3 | Barley | cytosol | 77.06 | 73.56 |
Zm00001d031871_P001 | Maize | cytosol | 77.21 | 73.45 |
OQU80682 | Sorghum | plasma membrane | 74.02 | 64.7 |
GSMUA_Achr8P24160_001 | Banana | plasma membrane | 45.29 | 54.13 |
GSMUA_Achr4P09980_001 | Banana | plasma membrane | 40.46 | 47.64 |
GSMUA_Achr8P29860_001 | Banana | endoplasmic reticulum | 36.01 | 43.85 |
GSMUA_Achr1P25070_001 | Banana | plasma membrane | 28.8 | 42.83 |
GSMUA_Achr2P20180_001 | Banana | plasma membrane | 28.95 | 40.0 |
GSMUA_Achr9P16700_001 | Banana | plasma membrane | 37.64 | 39.92 |
GSMUA_Achr3P17720_001 | Banana | peroxisome | 35.93 | 38.66 |
GSMUA_Achr4P17010_001 | Banana | peroxisome | 20.79 | 25.34 |
GSMUA_Achr1P18340_001 | Banana | plasma membrane | 36.08 | 23.23 |
Protein Annotations
Gene3D:1.20.1560.10 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | EnsemblPlantsGene:GSMUA_Achr4G12130_001 |
EnsemblPlants:GSMUA_Achr4P12130_001 | EnsemblPlants:GSMUA_Achr4T12130_001 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | UniProt:M0SN78 |
InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 |
PANTHER:PTHR24221 | PANTHER:PTHR24221:SF119 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix |
UniParc:UPI0002961966 | SEG:seg | : | : | : | : |
Description
ABC transporter B family member 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12130_001]
Coordinates
chr4:-:8881719..8887246
Molecular Weight (calculated)
145904.0 Da
IEP (calculated)
8.322
GRAVY (calculated)
0.079
Length
1347 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSQQQAFEHG EEEVIKGRVV VEEWSRPELQ AFHLHSPPHP SSADQDVPQE ELLVIEVAER GSGGVAGPVA AASGGAMSPA TTVSSSAAPG LEMEATNGNI
0101: KVEEPPVPPP SAAVATAPAA AGSGSQEDKK PAPPAPTVGF GKLFRFADGL DCVLMAVGTA GAIVHGCSLP IFLRFFADLV NSFGSNTGDP DTMVREVVKY
0201: AFYFLVVGAA IWASSWAEIS CWMWTGERQS TKMRIKYLEA ALNQDVRYFD TEVRTSDVVF AINADAVMVQ DAISEKLGNF IHYMATFVSG FVVGFTAAWQ
0301: LALVTLAVVP LIAVIGGIHT ATLAKLSSKS QDALSQASNI AEQALAQIRT VQSFVGESRV LQAYSASLGV AQKLGYRSGF AKGLGLGATY FTVFCCYALL
0401: LWYGGLLVRH HHTNGGLAIS TMFAVMIGGL ALGQSAPSMA AFAKARVAAA KIYRTIEHRP SIDRKNDTGI TIALVGSSGS GKSTVVSLIE RFYDPTAGQI
0501: LLDGHDIKSL KLRWLRQQIG LVSQEPALFA TTIKENLLLG REDATQVEME EAARVANAHS FIVKLPDGYD SQVGERGLQL SGGQKQRIAI ARAMLKNPAI
0601: LLLDEATSAL DSESEKLVQE ALDRFMIGRT TLVIAHRLST VRKADVVAVL QQGSVTEIGT HDELMGKGDN GLFAKLIRMQ EQAHEAALIN ARKSSARPSS
0701: ARNSVSSPII TRNSSYGRSP YSRRLSDFST SEFSFSVDPN HRMEKLAFRD QASSFLRLAK MNSPEWSYAL IGSIGSMVCG SMSAFFAYVL SAVLSAYYAQ
0801: DYKYMRREIG KYCYLMIGVS SVALLFNTMQ HLFWDVVGEN LTKRVREKML TSILRNEIAW FDREENASAR IAGRLTSDAH SVRSAIGDRI SVIVQNASLM
0901: LVAFTAGFVL QWRLALVLIA VFPVVVAATV LQKMFMNGFS GDLEVAHAKA TQIAGEAVSN VRTVAAFNSE AKITELFAAN LQSPLRRCFW KGQIAGSGFG
1001: IAQFLLYASY ALGLWYASWL VKHGISDFSK TIRVFMVLMV SANGAAEALT LAPDFIKGGR AMRSAFELID RKTEIEPDDL DAAPLPDRLR GEVEFKHVDF
1101: AYPSCPDMPV FRDLTLRARA GKMLALVGPS GCGKSTVISL IQRFYEPTSG RILIDGKDIR KYNLKALRRV ISVVPQEPFL FAASIFDNIA YGREAATEAE
1201: VVEAATMANA HKFISALPDG YRTWVGERGV QLSGGQRQRI AIARVLVKKA PIMLLDEATS ALDAEAERSV QEALERSGVG RTTIVVAHRL ATVRNAHVIA
1301: VIDDGKVVEQ GSHSHLLNHH PDGCYARMLQ LQRFSNNGVP QGPSSST
0101: KVEEPPVPPP SAAVATAPAA AGSGSQEDKK PAPPAPTVGF GKLFRFADGL DCVLMAVGTA GAIVHGCSLP IFLRFFADLV NSFGSNTGDP DTMVREVVKY
0201: AFYFLVVGAA IWASSWAEIS CWMWTGERQS TKMRIKYLEA ALNQDVRYFD TEVRTSDVVF AINADAVMVQ DAISEKLGNF IHYMATFVSG FVVGFTAAWQ
0301: LALVTLAVVP LIAVIGGIHT ATLAKLSSKS QDALSQASNI AEQALAQIRT VQSFVGESRV LQAYSASLGV AQKLGYRSGF AKGLGLGATY FTVFCCYALL
0401: LWYGGLLVRH HHTNGGLAIS TMFAVMIGGL ALGQSAPSMA AFAKARVAAA KIYRTIEHRP SIDRKNDTGI TIALVGSSGS GKSTVVSLIE RFYDPTAGQI
0501: LLDGHDIKSL KLRWLRQQIG LVSQEPALFA TTIKENLLLG REDATQVEME EAARVANAHS FIVKLPDGYD SQVGERGLQL SGGQKQRIAI ARAMLKNPAI
0601: LLLDEATSAL DSESEKLVQE ALDRFMIGRT TLVIAHRLST VRKADVVAVL QQGSVTEIGT HDELMGKGDN GLFAKLIRMQ EQAHEAALIN ARKSSARPSS
0701: ARNSVSSPII TRNSSYGRSP YSRRLSDFST SEFSFSVDPN HRMEKLAFRD QASSFLRLAK MNSPEWSYAL IGSIGSMVCG SMSAFFAYVL SAVLSAYYAQ
0801: DYKYMRREIG KYCYLMIGVS SVALLFNTMQ HLFWDVVGEN LTKRVREKML TSILRNEIAW FDREENASAR IAGRLTSDAH SVRSAIGDRI SVIVQNASLM
0901: LVAFTAGFVL QWRLALVLIA VFPVVVAATV LQKMFMNGFS GDLEVAHAKA TQIAGEAVSN VRTVAAFNSE AKITELFAAN LQSPLRRCFW KGQIAGSGFG
1001: IAQFLLYASY ALGLWYASWL VKHGISDFSK TIRVFMVLMV SANGAAEALT LAPDFIKGGR AMRSAFELID RKTEIEPDDL DAAPLPDRLR GEVEFKHVDF
1101: AYPSCPDMPV FRDLTLRARA GKMLALVGPS GCGKSTVISL IQRFYEPTSG RILIDGKDIR KYNLKALRRV ISVVPQEPFL FAASIFDNIA YGREAATEAE
1201: VVEAATMANA HKFISALPDG YRTWVGERGV QLSGGQRQRI AIARVLVKKA PIMLLDEATS ALDAEAERSV QEALERSGVG RTTIVVAHRL ATVRNAHVIA
1301: VIDDGKVVEQ GSHSHLLNHH PDGCYARMLQ LQRFSNNGVP QGPSSST
0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA
Arabidopsis Description
ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.