Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P15720_001 | |
| GSMUA_Achr6P12690_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G28860.1 | GSMUA_Achr6P12690_001 | AT3G21640.1 | 14517332 |
| AT3G28860.1 | GSMUA_Achr1P15720_001 | AT5G57090.1 | 17237354 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P09980_001 | Banana | plasma membrane | 82.79 | 81.56 |
| VIT_14s0108g00430.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 90.06 | 81.2 |
| KRH18485 | Soybean | endoplasmic reticulum, mitochondrion | 89.62 | 80.86 |
| KRG93519 | Soybean | cytosol, peroxisome, plasma membrane | 89.26 | 80.48 |
| Os04t0459000-01 | Rice | plasma membrane | 89.8 | 80.38 |
| EES12287 | Sorghum | cytosol, peroxisome, plasma membrane | 89.62 | 80.03 |
| PGSC0003DMT400003590 | Potato | plasma membrane | 88.47 | 79.82 |
| TraesCS2D01G322600.1 | Wheat | cytosol, peroxisome, plasma membrane | 89.26 | 79.65 |
| TraesCS2A01G344300.1 | Wheat | cytosol, peroxisome, plasma membrane | 89.26 | 79.65 |
| TraesCS2B01G341800.2 | Wheat | cytosol, peroxisome, plasma membrane | 89.26 | 79.59 |
| Solyc02g087870.2.1 | Tomato | plasma membrane | 88.2 | 79.58 |
| Zm00001d025590_P002 | Maize | cytosol, nucleus, plasma membrane | 89.26 | 79.03 |
| HORVU2Hr1G080200.1 | Barley | plasma membrane | 88.82 | 79.01 |
| EES12952 | Sorghum | cytosol, peroxisome, plasma membrane | 88.38 | 78.67 |
| Os04t0642000-01 | Rice | cytosol, peroxisome, plasma membrane | 42.41 | 78.1 |
| Zm00001d002119_P006 | Maize | cytosol | 87.67 | 78.04 |
| CDY00109 | Canola | plasma membrane | 86.16 | 77.99 |
| Zm00001d026426_P005 | Maize | cytosol | 88.02 | 77.93 |
| AT3G28860.1 | Thale cress | plasma membrane | 86.51 | 77.88 |
| Bra039042.1-P | Field mustard | plasma membrane | 86.42 | 77.8 |
| CDX86408 | Canola | plasma membrane | 85.36 | 77.77 |
| CDY20012 | Canola | plasma membrane | 86.42 | 77.73 |
| TraesCS2B01G550700.2 | Wheat | plasma membrane | 86.69 | 77.72 |
| HORVU2Hr1G115180.1 | Barley | cytosol, peroxisome, plasma membrane | 87.4 | 77.56 |
| CDY65012 | Canola | plasma membrane | 86.07 | 77.41 |
| Bra025359.1-P | Field mustard | plasma membrane | 85.98 | 77.4 |
| TraesCS2A01G521400.2 | Wheat | cytosol, peroxisome, plasma membrane | 86.78 | 77.25 |
| TraesCS2D01G523100.2 | Wheat | cytosol | 86.78 | 76.95 |
| GSMUA_Achr4P04430_001 | Banana | cytosol, peroxisome, plasma membrane | 54.66 | 45.46 |
| GSMUA_Achr4P12130_001 | Banana | cytosol | 54.13 | 45.29 |
| GSMUA_Achr8P29860_001 | Banana | endoplasmic reticulum | 44.37 | 45.21 |
| GSMUA_Achr2P20180_001 | Banana | plasma membrane | 38.15 | 44.1 |
| GSMUA_Achr1P25070_001 | Banana | plasma membrane | 35.05 | 43.6 |
| GSMUA_Achr9P16700_001 | Banana | plasma membrane | 44.01 | 39.06 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 41.88 | 37.7 |
| GSMUA_Achr4P17010_001 | Banana | peroxisome | 25.02 | 25.52 |
| GSMUA_Achr1P18340_001 | Banana | plasma membrane | 45.96 | 24.76 |
Protein Annotations
| Gene3D:1.20.1560.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 |
| EnsemblPlantsGene:GSMUA_Achr8G24160_001 | EnsemblPlants:GSMUA_Achr8P24160_001 | EnsemblPlants:GSMUA_Achr8T24160_001 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 |
| UniProt:M0TT69 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 |
| PFscan:PS50929 | PANTHER:PTHR24221 | PANTHER:PTHR24221:SF382 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 |
| TMHMM:TMhelix | UniParc:UPI000294AC77 | SEG:seg | : | : | : |
Description
ABC transporter B family member 19 [Source:GMGC_GENE;Acc:GSMUA_Achr8G24160_001]
Coordinates
chr8:+:28436723..28443261
Molecular Weight (calculated)
122161.0 Da
IEP (calculated)
8.014
GRAVY (calculated)
0.172
Length
1127 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAGSVGAVV HGSAMPVFFL LFGDLVNGFG KNQHHLMVMT HEVSKYALYF VYLGLVVCLS SYAEIACWMY TGERQASALR RKYLEAVLRQ DVGFFDTDAR
0101: TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWRLALL SVAVIPGIAF AGGLYAYTLT GLTSKSRESY ANAGIVAEQA IAQVRTVYSF
0201: VGESKALNSY SEAIQNTLKL GYKAGMAKGL GIGCTYGIAC MSWALVFWYA GVFIRNGQTD GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLLE
0301: IIRQKPSIVQ DQSDGKCLAE VHGNIELKDV TFSYPSRPDS TVVALIERFY DPNQGLILLD NVDIKTLQLK WLREQIGLVN QEPALFATTI LENILYGKPD
0401: ATIAEVEAAA SAANAHSFIS QLPNAYNTQV GERGVQLSGG QKQRIAIARA MLKNPKILLL DEATSALDAG SESIVQEALD RLMVGRTTVV VAHRLSTIRN
0501: VDMIAVIQQG QVVETGTHEE LLAKGSSGAY ASLIRFQEMA RNRDFGGSLR NLSYQYSTGA DGRIEMVSNA DNVLKYPAPR GYFFKLLKLN APEWPYTIMG
0601: AIGSVLSGFI GPTFAIVMSN MIEHYFFSIM GENLTTRVRR MMLSAILRNE VGWFDEEENN SSLVAARLAN DAADVKSAIA ERISVILQNM TSLLTSFIVG
0701: FIVEWRVALL ILATFPLLVL ANFAQQLSLK GFAGDTAKAH AKTSMIAGEG VSNIRTVAAF NAQSKILSLF CSELRVPQRR SLRRSQTSGI LYGISQLSLY
0801: ASEALILWYG AHLVRTGAST FSKVIKVFVV LVVTANSVAE TVSLAPEIVR GGESIRSVFA ILNRGTRIDP DDPEAEPVDS VRGEIELRHV EFAYPSRPDV
0901: TIFKDFNLRI RAGQSQALVG ASGSGKSTVI ALIERFYDPT AGKVLIDGKD IKRLNLKSLR LKIGLVQQEP VLFAASIMEN IAYGKDGATE EEVIEAARAA
1001: NVHGFVSALP DGYKTTVGER GVQLSGGQKQ RIAIARAVLK DPALLLLDEA TSALDAESEC VLQEALERLM KGRTTVLVAH RLSTIRGVDC IGVVQDGRVA
1101: EQGSHSDLVA RPDGAYSRLL QLQHYHV
0101: TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWRLALL SVAVIPGIAF AGGLYAYTLT GLTSKSRESY ANAGIVAEQA IAQVRTVYSF
0201: VGESKALNSY SEAIQNTLKL GYKAGMAKGL GIGCTYGIAC MSWALVFWYA GVFIRNGQTD GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLLE
0301: IIRQKPSIVQ DQSDGKCLAE VHGNIELKDV TFSYPSRPDS TVVALIERFY DPNQGLILLD NVDIKTLQLK WLREQIGLVN QEPALFATTI LENILYGKPD
0401: ATIAEVEAAA SAANAHSFIS QLPNAYNTQV GERGVQLSGG QKQRIAIARA MLKNPKILLL DEATSALDAG SESIVQEALD RLMVGRTTVV VAHRLSTIRN
0501: VDMIAVIQQG QVVETGTHEE LLAKGSSGAY ASLIRFQEMA RNRDFGGSLR NLSYQYSTGA DGRIEMVSNA DNVLKYPAPR GYFFKLLKLN APEWPYTIMG
0601: AIGSVLSGFI GPTFAIVMSN MIEHYFFSIM GENLTTRVRR MMLSAILRNE VGWFDEEENN SSLVAARLAN DAADVKSAIA ERISVILQNM TSLLTSFIVG
0701: FIVEWRVALL ILATFPLLVL ANFAQQLSLK GFAGDTAKAH AKTSMIAGEG VSNIRTVAAF NAQSKILSLF CSELRVPQRR SLRRSQTSGI LYGISQLSLY
0801: ASEALILWYG AHLVRTGAST FSKVIKVFVV LVVTANSVAE TVSLAPEIVR GGESIRSVFA ILNRGTRIDP DDPEAEPVDS VRGEIELRHV EFAYPSRPDV
0901: TIFKDFNLRI RAGQSQALVG ASGSGKSTVI ALIERFYDPT AGKVLIDGKD IKRLNLKSLR LKIGLVQQEP VLFAASIMEN IAYGKDGATE EEVIEAARAA
1001: NVHGFVSALP DGYKTTVGER GVQLSGGQKQ RIAIARAVLK DPALLLLDEA TSALDAESEC VLQEALERLM KGRTTVLVAH RLSTIRGVDC IGVVQDGRVA
1101: EQGSHSDLVA RPDGAYSRLL QLQHYHV
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Arabidopsis Description
ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.