CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73664
CDX78057
CDX82059
CDX88606
CDX90622
CDX96484
CDY11886
CDY20694
CDY29061
CDY34049
CDY38263
CDY47745
CDY53978
CDY64639
CDY69709
CDY72296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	CDX82059	AT1G73590.1	17237354
AT3G28860.1	CDX96484	AT1G73590.1	17237354
AT3G28860.1	CDY47745	AT1G73590.1	17237354
AT3G28860.1	CDY72296	AT1G73590.1	17237354
AT3G28860.1	CDX73664	AT3G21640.1	14517332
AT3G28860.1	CDX78057	AT3G21640.1	14517332
AT3G28860.1	CDX90622	AT3G21640.1	14517332
AT3G28860.1	CDY29061	AT3G21640.1	14517332
AT3G28860.1	CDY34049	AT3G21640.1	14517332
AT3G28860.1	CDY64639	AT3G21640.1	14517332
AT3G28860.1	CDX88606	AT5G57090.1	17237354
AT3G28860.1	CDY11886	AT5G57090.1	17237354
AT3G28860.1	CDY20694	AT5G57090.1	17237354
AT3G28860.1	CDY38263	AT5G57090.1	17237354
AT3G28860.1	CDY53978	AT5G57090.1	17237354
AT3G28860.1	CDY69709	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86408	Canola	plasma membrane	98.0	99.27
CDY20012	Canola	plasma membrane	96.81	96.81
CDY00109	Canola	plasma membrane	96.17	96.79
AT3G28860.1	Thale cress	plasma membrane	96.65	96.73
PGSC0003DMT400003590	Potato	plasma membrane	90.26	90.55
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	90.18	90.47
Solyc02g087870.2.1	Tomato	plasma membrane	90.1	90.39
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	89.78	90.0
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	89.07	89.28
GSMUA_Achr8P24160_001	Banana	plasma membrane	77.41	86.07
Os04t0459000-01	Rice	plasma membrane	82.68	82.29
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	81.96	81.31
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	81.96	81.25
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	81.56	80.98
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	81.56	80.92
HORVU2Hr1G080200.1	Barley	plasma membrane	81.64	80.74
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	81.88	80.6
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	80.77	79.94
Zm00001d002119_P006	Maize	cytosol	79.73	78.91
TraesCS2B01G550700.2	Wheat	plasma membrane	79.09	78.84
Zm00001d026426_P005	Maize	cytosol	79.97	78.71
TraesCS2D01G523100.2	Wheat	cytosol	79.49	78.36
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	79.17	78.36
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	38.23	78.27
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	79.33	78.27
GSMUA_Achr4P09980_001	Banana	plasma membrane	71.03	77.8
CDX84897	Canola	cytosol	6.46	68.64
CDX86437	Canola	cytosol	7.18	60.4
CDX86442	Canola	cytosol, mitochondrion, plastid	2.79	51.47
CDX94395	Canola	plasma membrane	50.2	50.97
CDY27639	Canola	plasma membrane	49.4	50.82
CDX93393	Canola	plasma membrane	49.4	50.53
CDY37953	Canola	plasma membrane	49.32	50.45
CDY46744	Canola	cytosol, peroxisome, plasma membrane	52.75	49.4
CDX89380	Canola	plasma membrane	50.2	49.33
CDX79704	Canola	plasma membrane	52.67	49.22
CDX92739	Canola	plasma membrane	48.52	48.99
CDY42770	Canola	golgi, plasma membrane, vacuole	42.94	47.4
CDX84896	Canola	plasma membrane	39.66	47.29
CDY48003	Canola	cytosol	44.93	47.23
CDX80072	Canola	cytosol	44.77	46.83
CDY27510	Canola	cytosol	44.69	46.71
CDX67881	Canola	cytosol	44.13	46.05
CDY37776	Canola	cytosol, peroxisome, plasma membrane	45.49	45.86
CDY25095	Canola	cytosol	44.05	45.77
CDX86445	Canola	plasma membrane	45.17	45.5
CDY35168	Canola	golgi, peroxisome, plasma membrane	39.51	45.37
CDX85192	Canola	plasma membrane	45.17	44.6
CDY15432	Canola	cytosol	43.42	44.44
CDY04018	Canola	plasma membrane	43.81	44.24
CDY51307	Canola	cytosol, peroxisome, plasma membrane	44.61	44.22
CDX89963	Canola	cytosol, nucleus, plasma membrane	44.29	43.91
CDY15249	Canola	cytosol, peroxisome, plasma membrane	44.21	43.62
CDY24379	Canola	plasma membrane	40.62	43.54
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	40.3	43.09
CDY58790	Canola	peroxisome	41.82	42.57
CDY51560	Canola	peroxisome	41.82	41.89
CDY21871	Canola	endoplasmic reticulum, plasma membrane	2.39	41.67
CDY64952	Canola	peroxisome, plasma membrane, vacuole	30.25	38.48
CDY65312	Canola	cytosol	41.42	37.1
CDX76106	Canola	cytosol, golgi, peroxisome	41.34	37.0
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	41.1	36.76
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	41.26	36.72
CDY24958	Canola	mitochondrion, plasma membrane, plastid	40.86	36.7
CDY07647	Canola	cytosol	40.94	36.62

Protein Annotations

MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	GO:A0A078JHX2	UniProt:A0A078JHX2	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDY65012	ProteinID:CDY65012
ProteinID:CDY65012.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00044013001
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0004EDB5C1	SEG:seg	:

Description

BnaCnng45670DBnaCnng45670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHX2]

Coordinates

chrLK034624:-:5806..12609

Molecular Weight (calculated)

136827.0 Da

IEP (calculated)

8.158

GRAVY (calculated)

0.131

Length

1253 amino acids

Sequence
(BLAST)

0001: MSETTADPKP VPPAEAEKKK EESLPFFKLF SFADKFDYLL MITGTLGAIV HGSSMPVFFL LFGEMVNGFG KNQMDLHQMT HEVSKYALYF VYLGLIVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWRLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALSSY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRSGTTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGFKLME IINQRPTIIQ DPLDGKCLDQ VRGDIEFKDV TFSYPSRPDV IIFRNFSIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN NAGQILLDGV EIKTLQLKFL REQIGLVNQE PALFATTILE NILYGKPDAT MVEVEAAASA ANAHSFITLL PKGYETQVGE
0501: RGVQLSGGQK QRIAIARAML KDPKILLLDE ATSALDASSE SIVQEALDRV MVGRTTVVVA HRLCTIRNVD SIAVIQQGQV VETGTHEELI AKAGAYASLI
0601: RFQEMVGTRD FSNPSTRRTR STRLSNSLST KSLSLRSGSL RNLSYSYSTG ADGRIEMISN AETDRKTRAP QNYFYRLLKL NAPEWPYSIM GAVGSVLSGF
0701: IGPTFAIVMS NMIEVFYYTD YDSMERKTKE YVFIYIGAGI YAVIAYLIQH YFFSIMGENL TTRVRRMMLS AILRNEVGWF DEDEHNSSLI AARLATDAAD
0801: VKSAIAERIS VILQNMTSLL TSFIVAFIVE WRVSLLILAT FPLLVLANFA QQLSLKGFAG DTAKAHAKTS MIAGEGVSNI RTVAAFNAQS KILSLFCHEL
0901: RVPQKRSFYR SQTSGFLFGL SQLALYGSEA LILWYGAHLV SEGKSTFSKV IKVFVVLVIT ANSVAETVSL APEIIRGGEA VGSVFSVLDR QTRIDPDDAD
1001: ADPVETIRGD IDFRHVDFAY PSRPDVMVFR DFNLRIRAGH SQALVGASGS GKSSVIAMIE RFYDPLGGKV MIDGKDIRRL NLKSLRLKIG LVQQEPALFA
1101: ATIFDNIAYG KDGATESEVI EAARAANAHG FISGLPEGYK TPVGERGVQL SGGQKQRIAI ARAVLKNPTV LLLDEATSAL DAESECMLQE ALERLMRGRT
1201: TVVVAHRLST IRGVDSIGVI QDGRIVEQGS HSELVSRPEG AYSRLLQLQT HRI

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.