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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27639 Canola plasma membrane 94.67 81.69
AT1G27940.1 Thale cress peroxisome, plasma membrane, vacuole 88.77 74.94
VIT_18s0001g14660.t01 Wine grape peroxisome, plasma membrane, vacuole 68.41 58.93
KRH17450 Soybean plasma membrane 67.94 57.12
KRH05968 Soybean plasma membrane 67.65 56.88
CDX86408 Canola plasma membrane 47.0 39.94
CDY00109 Canola plasma membrane 47.19 39.84
CDY20012 Canola plasma membrane 47.29 39.66
CDY65012 Canola plasma membrane 47.29 39.66
CDX94395 Canola plasma membrane 45.86 39.06
CDY37953 Canola plasma membrane 45.29 38.86
CDX93393 Canola plasma membrane 45.2 38.78
CDX92739 Canola plasma membrane 45.2 38.28
CDX89380 Canola plasma membrane 45.77 37.73
CDY64952 Canola peroxisome, plasma membrane, vacuole 34.73 37.06
CDY42770 Canola golgi, plasma membrane, vacuole 38.63 35.77
CDY46744 Canola cytosol, peroxisome, plasma membrane 45.2 35.5
CDX79704 Canola plasma membrane 45.0 35.27
CDY21871 Canola endoplasmic reticulum, plasma membrane 2.38 34.72
CDY27510 Canola cytosol 38.34 33.61
CDX86445 Canola plasma membrane 39.68 33.52
CDX89963 Canola cytosol, nucleus, plasma membrane 40.25 33.47
CDX67881 Canola cytosol 38.15 33.39
CDY15249 Canola cytosol, peroxisome, plasma membrane 40.15 33.23
CDY51307 Canola cytosol, peroxisome, plasma membrane 39.96 33.23
CDY48003 Canola cytosol 37.68 33.22
CDY25095 Canola cytosol 37.77 32.92
CDX80072 Canola cytosol 37.39 32.8
CDY04018 Canola plasma membrane 38.73 32.8
CDX85192 Canola plasma membrane 39.49 32.7
CDY15432 Canola cytosol 38.06 32.68
CDY37776 Canola cytosol, peroxisome, plasma membrane 38.06 32.18
CDY24379 Canola plasma membrane 35.39 31.82
CDY35168 Canola golgi, peroxisome, plasma membrane 33.02 31.81
CDY58790 Canola peroxisome 37.2 31.76
CDY20842 Canola endoplasmic reticulum, golgi, plasma membrane 35.39 31.74
CDY51560 Canola peroxisome 37.49 31.49
CDY20443 Canola cytosol, mitochondrion, plasma membrane 38.53 28.91
CDY53591 Canola cytosol, mitochondrion, plasma membrane 38.73 28.91
CDY24958 Canola mitochondrion, plasma membrane, plastid 38.25 28.82
CDY07647 Canola cytosol 38.34 28.77
CDX76106 Canola cytosol, golgi, peroxisome 37.96 28.5
CDY65312 Canola cytosol 37.77 28.38
CDX84897 Canola cytosol 0.38 3.39
CDX86437 Canola cytosol 0.19 1.34
CDX86442 Canola cytosol, mitochondrion, plastid 0.0 0.0
Protein Annotations
MapMan:24.1.3.1.1Gene3D:3.40.50.300GO:A0A078D6F0InterPro:AAA+_ATPaseInterPro:ABC1_TM_domInterPro:ABC1_TM_sf
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEnsemblPlants:CDX84896ProteinID:CDX84896ProteinID:CDX84896.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887
GO:GO:0042626GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00142221001InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640
InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664ScanProsite:PS00211PFscan:PS50893PFscan:PS50929
PANTHER:PTHR24221PANTHER:PTHR24221:SF235SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123TMHMM:TMhelix
UniParc:UPI0004EE043DSEG:seg::::
Description
BnaC05g21590D
Coordinates
chrLK031839:+:3603..7723
Molecular Weight (calculated)
113948.0 Da
IEP (calculated)
9.118
GRAVY (calculated)
0.123
Length
1051 amino acids
Sequence
(BLAST)
0001: MDSTEPSSNG NIQNEKDSKK KDYVSLMGLF GAADKLDCFL MILGGLGACT LGATLPLFFV FFGKMLDSIG NLSTDPKALS SRVSKNALDL VYLGLVTFLS
0101: AWIGVACWTQ TGERQTARLR INYLKAVLAK DITFFDTEAR DSNLIFHISS DAILVQDAIG DKTGHVLRYL SQFVAGFVVG FLSVWQLTLL TLAVVPLIAI
0201: AGGGYAIIMS TISEKSEAAY ADAGKVAEEV ISQVRTVYAF VGEEKAVNSY SNSLKKALKL CKRSGLAKGL GVGLTYSLLF CAWALLLWYA SLLVRHGKTN
0301: GAKAFTTILN VIFSGFALGQ AAPSISAISK GRVAAANIFR MIENNNLEGS ERLDNGTTLQ NVAGKIEFHQ VSFAYPSRPN MVFENLSLTI PSGMTFAFVG
0401: PSGSGKSTII SMVQRFYEPN SGEILLDGND IKRLKLSWLR EQMGLVSQEP ALFASTIASN ILLGKENANM DQIIEAAKAA NADSFIKSLP NGYNTQVGGG
0501: GTQLSGGQKQ RIAIARAVLR NPKILLLDEA TSALDAESEK IVQQALDNVM EKRTTLVVAH RLSTIRNVDK IVVLRNGQVV ETGSHSELLS RGGDYASLVN
0601: VQETEPQENP RSIMSETGKS QAGSSSSRRA SGSRRTSSFR EVQEKTDKDS NGEDLSSSST IWELIKLNAP EWPYALLGSI GAVLAGAQTP LFSMGIAYVL
0701: TAFYSPSPSV IKRDVEKVAI VFVGIAVVTA PIYLLQHYFY TLMGERLTSR VRLSLFSAIL SNEIGWFDLD ENNTGSLTSI LAADATLVRS ALADRLSTIV
0801: QNLSLTVTAL AIAFYYSWRV AAVVTSCFPL LIAAALTEQL FLKGFGGDYT RAYSRATSVA REAIENIRTV ASFGAEKQIS EQFACELSKP TKSAFLRGHI
0901: SGIGYGFSQF LAFCSYALGL WYVSVLIKHK ETNFSDSIKA FMVLIVTAFS VAETLALTPD IVKGTQALGS VFRVLHRETE IPPDHPNSRL VTQIKGDLEF
1001: RNVSFAYPAR LDIPIFQNLN LRVSAGKSLA VVGPSGQSLH RWERYKNPKP T
Best Arabidopsis Sequence Match ( AT1G27940.1 )
(BLAST)
0001: MDNTERSSNG NIQAETEAKE EKKNIKKESV SLMGLFSAAD KLDYFLMLLG GLGACIHGAT LPLFFVFFGK MLDSLGNLST DPKAISSRVS QNALYLVYLG
0101: LVNFVSAWIG VSCWMQTGER QTARLRINYL KSILAKDITF FDTEARDSNL IFHISSDAIL VQDAIGDKTD HVLRYLSQFI AGFVIGFLSV WQLTLLTLGV
0201: VPLIAIAGGG YAIVMSTISE KSETAYADAG KVAEEVMSQV RTVYAFVGEE KAVKSYSNSL KKALKLGKRS GLAKGLGVGL TYSLLFCAWA LLLWYASLLV
0301: RHGKTNGAKA FTTILNVIFS GFALGQAAPS LSAIAKGRVA AANIFRMIGN NNSESSQRLD EGTTLQNVAG RIEFQKVSFA YPSRPNMVFE NLSFTIRSGK
0401: TFAFVGPSGS GKSTIISMVQ RFYEPNSGEI LLDGNDIKSL KLKWFREQLG LVSQEPALFA TTIASNILLG KENANMDQII EAAKAANADS FIKSLPNGYN
0501: TQVGEGGTQL SGGQKQRIAI ARAVLRNPKI LLLDEATSAL DAESEKIVQQ ALDNVMEKRT TIVVAHRLST IRNVDKIVVL RDGQVRETGS HSELMLRGGD
0601: YATLVNCQET EPQENSRSIM SETCKSQAGS SSSRRVSSSR RTSSFRVDQE KTKNDDSKKD FSSSSMIWEL IKLNSPEWPY ALLGSIGAVL AGAQTPLFSM
0701: GIAYVLTAFY SPFPNVIKRD VEKVAIIFAG AGIVTAPIYL LQHYFYTLMG ERLTSRVRLS LFSAILSNEI GWFDLDENNT GSLTSILAAD ATLVRSALAD
0801: RLSTIVQNLS LTVTALALAF FYSWRVAAVV TACFPLLIAA SLTEQLFLKG FGGDYTRAYS RATSVAREAI ANIRTVAAYG AEKQISEQFT CELSKPTKNA
0901: FVRGHISGFG YGLSQFLAFC SYALGLWYVS VLINHKETNF GDSIKSFMVL IVTAFSVSET LALTPDIVKG TQALGSVFRV LHRETKISPD QPNSRMVSQV
1001: KGDIEFRNVS FVYPTRPEID IFKNLNLRVS AGKSLAVVGP SGSGKSTVIG LIMRFYDPSN GNLCIDGQDI KTLNLRSLRK KLALVQQEPA LFSTTIYENI
1101: KYGNENASEA EIMEAAKAAN AHEFIIKMEE GYKTHAGDKG VQLSGGQKQR VAIARAVLKD PSVLLLDEAT SALDTSSEKL VQEALDKLMK GRTTVLVAHR
1201: LSTIRKADTV AVLHKGRVVE KGSHRELVSI PNGFYKQLTS LQEVL
Arabidopsis Description
ABCB13PGP13 [Source:UniProtKB/TrEMBL;Acc:A0A178W4F4]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.