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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86442 Canola cytosol, mitochondrion, plastid 40.94 89.71
CDX84897 Canola cytosol 47.65 60.17
CDX86445 Canola plasma membrane 83.89 10.05
CDX85192 Canola plasma membrane 83.89 9.85
CDY04018 Canola plasma membrane 81.88 9.83
CDY35168 Canola golgi, peroxisome, plasma membrane 60.4 8.25
CDY42770 Canola golgi, plasma membrane, vacuole 57.72 7.58
CDY48003 Canola cytosol 59.73 7.47
CDY27510 Canola cytosol 59.73 7.42
CDX67881 Canola cytosol 59.73 7.41
CDY27639 Canola plasma membrane 60.4 7.39
CDY25095 Canola cytosol 59.73 7.38
CDX80072 Canola cytosol 59.06 7.35
CDY00109 Canola plasma membrane 61.07 7.31
CDY15432 Canola cytosol 59.73 7.27
CDY20012 Canola plasma membrane 61.07 7.26
CDX93393 Canola plasma membrane 59.06 7.18
CDY65012 Canola plasma membrane 60.4 7.18
CDY20842 Canola endoplasmic reticulum, golgi, plasma membrane 56.38 7.17
CDY37776 Canola cytosol, peroxisome, plasma membrane 59.73 7.16
CDX86408 Canola plasma membrane 59.06 7.11
CDY37953 Canola plasma membrane 58.39 7.1
CDY24379 Canola plasma membrane 55.7 7.1
CDX94395 Canola plasma membrane 58.39 7.05
CDX89963 Canola cytosol, nucleus, plasma membrane 59.73 7.04
CDY51307 Canola cytosol, peroxisome, plasma membrane 59.06 6.96
CDX92739 Canola plasma membrane 57.72 6.93
CDY15249 Canola cytosol, peroxisome, plasma membrane 59.06 6.93
CDX89380 Canola plasma membrane 58.39 6.82
CDY58790 Canola peroxisome 55.03 6.66
CDY51560 Canola peroxisome 55.7 6.63
CDY46744 Canola cytosol, peroxisome, plasma membrane 56.38 6.28
CDX79704 Canola plasma membrane 56.38 6.26
CDY24958 Canola mitochondrion, plasma membrane, plastid 45.64 4.87
CDY20443 Canola cytosol, mitochondrion, plasma membrane 45.64 4.85
CDY07647 Canola cytosol 45.64 4.85
CDY53591 Canola cytosol, mitochondrion, plasma membrane 45.64 4.83
CDY65312 Canola cytosol 44.97 4.79
CDX76106 Canola cytosol, golgi, peroxisome 44.3 4.71
CDX84896 Canola plasma membrane 1.34 0.19
CDY21871 Canola endoplasmic reticulum, plasma membrane 0.0 0.0
CDY64952 Canola peroxisome, plasma membrane, vacuole 0.0 0.0
Protein Annotations
EnsemblPlants:CDX86437EnsemblPlantsGene:GSBRNA2T00144580001Gene3D:3.40.50.300GO:A0A078DBL7GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0016787GO:GO:0016887InterPro:ABC_transporter-like
InterPro:IPR003439InterPro:P-loop_NTPasePANTHER:PTHR24221PANTHER:PTHR24221:SF381PFAM:PF00005ProteinID:CDX86437
ProteinID:CDX86437.1SUPFAM:SSF52540UniParc:UPI0004EF2DC6MapMan:35.1::
Description
BnaA06g31540D
Coordinates
chrLK031845:+:1553762..1554211
Molecular Weight (calculated)
15958.1 Da
IEP (calculated)
6.244
GRAVY (calculated)
0.034
Length
149 amino acids
Sequence
(BLAST)
001: MYGAASENID ESEIIEVAKA ANAHEFITSL SNGYDTICGA RGLQLSGGQK QRIAIARAVL KNPSVLLLDE ATSALDSQSE RLVQDALERV MVGRTSVVIA
101: HRLSTIQNCN VIAVWDKGKV VECGDHSSLL AKGPTGAYFS LVNLQRNLC
Best Arabidopsis Sequence Match ( AT3G28360.1 )
(BLAST)
0001: MKTWGSMRSI FMHADGVDWM LMGLGLIGAV GDGFITPILF FITAMLLNDF GSFSFNDETF MQPISKNALA MLYVACASWV ICFLEGYCWT RTGERQAAKM
0101: RERYLRAVLR QDVGYFDLHV TSTSDIITSV SSDSLVIQDF LSEKLPNILM NASAFVGSYI VGFMLLWRLT IVGFPFIILL LIPGLMYGRA LIGISRKIRE
0201: EYNEAGSIAE QAISSVRTVY AFVSEKKMIE KFSDALQGSV KLGLRQGLAK GIAIGSNGIV YAIWGFLTWY GSRMVMNYGY KGGTVSTVTV CVTFGGTALG
0301: QALSNLKYFS EAFVAGERIQ KMIKRVPDID SDNLNGHILE TIRGEVEFNN VKCKYPSRPE TLIFDDLCLK IPSGKTVALV GGSGSGKSTV ISLLQRFYDP
0401: NEGDILIDSV SINNMQVKWL RSQMGMVSQE PSLFATSIKE NILFGKEDAS FDEVVEAAKA SNAHNFISQF PHGYQTQVGE RGVHMSGGQK QRIAIARALI
0501: KSPIILLLDE ATSALDLESE RVVQEALDNA SVGRTTIVIA HRLSTIRNAD IICVLHNGCI VETGSHDKLM EIDGKYTSLV RLQQMKNEES CDNTSVGVKE
0601: GRVSSLRNDL DYNPRDLAHS MSSSIVTNLS DSIPQDKKPL VPSFKRLMAM NRPEWKHALC GCLSASLGGA VQPIYAYSSG LMISVFFLTN HEQIKENTRI
0701: YVLLFFGLAL FTFFTSISQQ YSFSYMGEYL TKRIREQMLS KILTFEVNWF DEEENSSGAI CSRLAKDANV VRSLVGERMS LLVQTISTVM VACTIGLVIA
0801: WRFTIVMISV QPVIIVCYYI QRVLLKNMSK KAIIAQDESS KLAAEAVSNI RTITTFSSQE RIMKLLERVQ EGPRRESARQ SWLAGIMLGT TQSLITCTSA
0901: LNFWYGGKLI ADGKMVSKAF FELFLIFKTT GRAIAEAGTM TTDLAKGSNS VDSVFTVLDR RTTIEPENPD GYILEKIKGQ ITFLNVDFAY PTRPNMVIFN
1001: NFSIEIHEGK STAIVGPSRS GKSTVIGLIE RFYDPLQGIV KIDGRDIRSY HLRSLRQHMS LVSQEPTLFA GTIRENIMYG RASNKIDESE IIEAGKTANA
1101: HEFITSLSDG YDTYCGDRGV QLSGGQKQRI AIARTILKNP SILLLDEATS ALDSQSERVV QDALEHVMVG KTSVVIAHRL STIQNCDTIA VLDKGKVVES
1201: GTHASLLAKG PTGSYFSLVS LQRKVRYV
Arabidopsis Description
ABCB16ABC transporter B family member 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSJ8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.