CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73664
CDX78057
CDX82059
CDX88606
CDX90622
CDX96484
CDY11886
CDY20694
CDY29061
CDY34049
CDY38263
CDY47745
CDY53978
CDY64639
CDY69709
CDY72296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	CDX82059	AT1G73590.1	17237354
AT2G36910.1	CDX96484	AT1G73590.1	17237354
AT2G36910.1	CDY47745	AT1G73590.1	17237354
AT2G36910.1	CDY72296	AT1G73590.1	17237354
AT2G36910.1	CDX73664	AT3G21640.1	14517332
AT2G36910.1	CDX78057	AT3G21640.1	14517332
AT2G36910.1	CDX90622	AT3G21640.1	14517332
AT2G36910.1	CDY29061	AT3G21640.1	14517332
AT2G36910.1	CDY34049	AT3G21640.1	14517332
AT2G36910.1	CDY64639	AT3G21640.1	14517332
AT2G36910.1	CDX88606	AT5G57090.1	17237354
AT2G36910.1	CDY11886	AT5G57090.1	17237354
AT2G36910.1	CDY20694	AT5G57090.1	17237354
AT2G36910.1	CDY38263	AT5G57090.1	17237354
AT2G36910.1	CDY53978	AT5G57090.1	17237354
AT2G36910.1	CDY69709	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	99.33	99.48
CDY46744	Canola	cytosol, peroxisome, plasma membrane	99.25	99.48
AT2G36910.1	Thale cress	peroxisome	92.02	95.96
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	85.83	85.96
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	85.38	85.32
KRH32507	Soybean	cytosol, nucleus, plasma membrane	84.79	84.66
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	83.97	83.97
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.97	83.16
Solyc09g008240.2.1	Tomato	peroxisome	81.43	83.11
PGSC0003DMT400009924	Potato	peroxisome	82.55	83.05
TraesCS7A01G284900.1	Wheat	plasma membrane	73.15	78.73
GSMUA_Achr4P12130_001	Banana	cytosol	74.94	74.61
TraesCS7B01G181700.1	Wheat	cytosol	74.72	73.25
TraesCS7D01G284100.1	Wheat	cytosol	75.02	73.16
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	73.68	72.92
Os08t0564300-04	Rice	plasma membrane	71.96	71.8
HORVU7Hr1G063020.3	Barley	cytosol	74.87	71.16
Zm00001d031871_P001	Maize	cytosol	73.15	69.28
OQU80682	Sorghum	plasma membrane	71.89	62.56
CDX84897	Canola	cytosol	5.07	57.63
CDX86437	Canola	cytosol	6.26	56.38
CDX86408	Canola	plasma membrane	48.92	53.03
CDY65012	Canola	plasma membrane	49.22	52.67
CDY00109	Canola	plasma membrane	48.62	52.37
CDY20012	Canola	plasma membrane	48.7	52.11
CDX86442	Canola	cytosol, mitochondrion, plastid	2.61	51.47
CDX94395	Canola	plasma membrane	45.94	49.92
CDX89380	Canola	plasma membrane	45.86	48.24
CDX92739	Canola	plasma membrane	44.59	48.19
CDX93393	Canola	plasma membrane	43.85	48.0
CDY27639	Canola	plasma membrane	43.48	47.87
CDY37953	Canola	plasma membrane	43.62	47.76
CDY42770	Canola	golgi, plasma membrane, vacuole	39.45	46.61
CDX84896	Canola	plasma membrane	35.27	45.0
CDY25095	Canola	cytosol	39.97	44.44
CDX67881	Canola	cytosol	39.75	44.38
CDY35168	Canola	golgi, peroxisome, plasma membrane	36.09	44.36
CDX86445	Canola	plasma membrane	40.79	43.97
CDX80072	Canola	cytosol	38.93	43.57
CDY27510	Canola	cytosol	38.93	43.54
CDY48003	Canola	cytosol	38.63	43.46
CDX89963	Canola	cytosol, nucleus, plasma membrane	40.79	43.28
CDY15432	Canola	cytosol	39.37	43.14
CDY24379	Canola	plasma membrane	37.58	43.11
CDY51307	Canola	cytosol, peroxisome, plasma membrane	40.57	43.04
CDX85192	Canola	plasma membrane	40.72	43.03
CDY15249	Canola	cytosol, peroxisome, plasma membrane	40.72	42.99
CDY04018	Canola	plasma membrane	39.67	42.87
CDY37776	Canola	cytosol, peroxisome, plasma membrane	39.15	42.24
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	36.61	41.89
CDY58790	Canola	peroxisome	37.81	41.19
CDY51560	Canola	peroxisome	38.11	40.85
CDY65312	Canola	cytosol	39.82	38.17
CDX76106	Canola	cytosol, golgi, peroxisome	39.75	38.07
CDY64952	Canola	peroxisome, plasma membrane, vacuole	27.89	37.97
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	39.6	37.9
CDY24958	Canola	mitochondrion, plasma membrane, plastid	39.37	37.85
CDY07647	Canola	cytosol	39.52	37.83
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	39.45	37.57
CDY21871	Canola	endoplasmic reticulum, plasma membrane	1.64	30.56

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	GO:A0A078CUL7	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDX79704	ProteinID:CDX79704	ProteinID:CDX79704.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00132514001	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF384	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0004EE7DCE	SEG:seg	:	:	:

Description

BnaC03g20400D

Coordinates

chrLK031818:+:1772514..1777976

Molecular Weight (calculated)

147001.0 Da

IEP (calculated)

7.984

GRAVY (calculated)

0.007

Length

1341 amino acids

Sequence
(BLAST)

0001: MSQESVQIEE EIKSLEQWRW SEMQGLELLP EPSSNSNKNS RNPETELQEH PPEMENGGGT PPPPPPATAE EPKKAEIRGV AFKELFRFAD GLDYVLMTIG
0101: SVGAFVHGCS LPLFLRFFAD LVNSFGSNAN NVDKMMQEVL KYALYFLVVG AAIWASSWAE ISCWMWTGER QTTKMRIKYL EAALNQDIQF FDTEVRTSDV
0201: VSAINTDAVM VQDAISEKLG NFIHYMATFV SGFIVGFTAV WQLALVTIAV VPLIAVIGGI HTTTLSKLSN KSQESLSQAG NIVEQQTVVQ IRVVMAFVGE
0301: SRASQAYSSA LKTAQKLGYK TGFAKGMGLG ATYFVVFCCY ALLLWYGGYL VRHHLTNGGL AIATMFAVMI GGLGLGQSVP SMAAFAKAKV AAAKIFRIID
0401: HKPTIERNSV SGVELESVTG LVELKNVDFS YPSRPDVKIL NEFTLSVPAG KTIALVGSSG SGKSTVVSLI ERFYDPTSGQ VLLDGHHLKT LKLKWLRQQI
0501: GLVSQEPALF ATSIKENILL GRPDADQVEV EEAARVANAH SFIIKLPDGF DTQVGERGLQ LSGGQKQRIA IARAMLKNPA ILLLDEATSA LDSESEKLVQ
0601: EALDRFMIGR TTLIIAHRLS TIRKADLVAV LQQGSVSEIG THDELFAKGE NGIYSKLIKM QEAAHETAMN NARKSSARPS SARNSVSSPI IARNSSYGRS
0701: PYSRRLSDFS TTDFSLSVEA SSYPNYRHDK LPFKDQANSF WRLAKMNSPE WKYALVGSVG SVICGSLSAF FAYVLSAVLS IYYNPDHNYM IKQIDKYCYL
0801: LIGLSSAALI FNTLQHSFWD IVGENLTKRV REKMLTAVLK NEMAWFDQEE NESARISARL ALDANNVRSA IGDRISVIVQ NTALMLVACT AGFVLQWRLA
0901: LVLVAVFPVV VAATVLQKMF MTGFSGDLEA AHAKGTQLAG DAIANVRTVA AFNSEAKIVR LYTANLEPPL KRCFWKGQIA GSGYGVAQFC LYASYALGLW
1001: YASWLVKHGI SDFSKTIRVF MVLMVSANGA AETLTLAPDF IKGGQAMRSV FELLDRKTEI EPDDLDTTPV PDRLRGEVEL KHIDFSYPSR PDIQVFRDLS
1101: LRARAGKTLA LVGPSGCGKS SVISLIQRFY EPSSGRVLID GKDIRKYNLK AIRKHIAIVP QEPCLFGTTI YENIAYGHEC ATEAEIIQAA TLASAHKFIS
1201: ALPDGYKTYV GERGVQLSGG QKQRIAIARA LVRKAEIMLL DEATSALDAE SERSVQEALD QACCGRTSIV VAHRLSTIRN AHVIAVIDDG KVAEQGSHSH
1301: LLKNYPDGIY ARMIQLQRFT HTQVIGMTSG SSSRVNKEDD A

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.