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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70737
CDX79704
CDX84294
CDX84994
CDX84995
CDX86408
CDX87453
CDY00109
CDY03849
CDY17273
CDY20012
CDY24397
CDY24398
CDY24399
CDY31621
CDY35849
CDY36104
CDY42101
CDY43662
CDY46744
CDY51132
CDY65012
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73590.1 CDX70737 AT1G25490.1 17889649
AT1G73590.1 CDX84994 AT1G25490.1 17889649
AT1G73590.1 CDX84995 AT1G25490.1 17889649
AT1G73590.1 CDX87453 AT1G25490.1 17889649
AT1G73590.1 CDY03849 AT1G25490.1 17889649
AT1G73590.1 CDY24397 AT1G25490.1 17889649
AT1G73590.1 CDY24398 AT1G25490.1 17889649
AT1G73590.1 CDY24399 AT1G25490.1 17889649
AT1G73590.1 CDY31621 AT1G25490.1 17889649
AT1G73590.1 CDY35849 AT1G25490.1 17889649
AT1G73590.1 CDY36104 AT1G25490.1 17889649
AT1G73590.1 CDY42101 AT1G25490.1 17889649
AT1G73590.1 CDY51132 AT1G25490.1 17889649
AT1G73590.1 CDY70440 AT1G25490.1 17889649
AT1G73590.1 CDX84294 AT2G34650.1 17889649
AT1G73590.1 CDY17273 AT2G34650.1 17889649
AT1G73590.1 CDY43662 AT2G34650.1 17889649
AT1G73590.1 CDX79704 AT2G36910.1 17237354
AT1G73590.1 CDY46744 AT2G36910.1 17237354
AT1G73590.1 CDX86408 AT3G28860.1 17237354
AT1G73590.1 CDY00109 AT3G28860.1 17237354
AT1G73590.1 CDY20012 AT3G28860.1 17237354
AT1G73590.1 CDY65012 AT3G28860.1 17237354
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96484 Canola plasma membrane 94.3 92.71
CDY47745 Canola golgi, plasma membrane 98.29 90.07
Bra008105.1-P Field mustard golgi, plasma membrane 98.86 84.42
AT1G73590.1 Thale cress plasma membrane 96.01 81.19
CDY72296 Canola golgi, plasma membrane 68.06 79.03
KRH48642 Soybean plasma membrane 80.04 69.59
KRH41847 Soybean golgi, plasma membrane 78.9 68.82
VIT_17s0000g02420.t01 Wine grape plasma membrane 76.81 68.01
Solyc03g118740.2.1 Tomato golgi, plasma membrane 78.52 67.59
PGSC0003DMT400014752 Potato golgi, plasma membrane 77.95 66.78
KRH39071 Soybean plasma membrane 51.33 64.29
CDX68327 Canola plasma membrane 57.22 62.06
CDY23471 Canola golgi, plasma membrane 57.03 60.85
CDY25767 Canola plasma membrane 66.16 60.73
CDY12491 Canola plasma membrane 65.97 60.45
CDY40380 Canola plasma membrane 64.07 59.96
CDY63826 Canola plasma membrane 63.88 59.68
CDX96288 Canola golgi, plasma membrane 65.78 59.35
CDY68262 Canola plasma membrane 65.78 59.25
CDY38263 Canola plasma membrane 64.07 58.3
CDY11886 Canola plasma membrane 67.11 57.03
CDX91695 Canola plasma membrane 61.79 56.92
CDY53978 Canola plasma membrane 63.12 55.7
CDY41467 Canola plasma membrane 61.79 55.65
CDY20694 Canola plasma membrane 66.35 54.96
CDX88606 Canola plasma membrane 66.35 54.28
CDY69709 Canola plasma membrane 62.36 54.13
CDY09501 Canola plasma membrane 55.32 51.6
CDY67254 Canola golgi, plasma membrane, vacuole 33.27 50.29
CDX69445 Canola golgi, plasma membrane, vacuole 33.27 50.29
CDX70699 Canola golgi, plasma membrane, vacuole 32.89 49.71
CDX88341 Canola plasma membrane 52.28 48.5
CDX87543 Canola plasma membrane 52.09 48.32
CDX85565 Canola plasma membrane 31.75 46.13
CDX69551 Canola endoplasmic reticulum, extracellular, vacuole 19.58 45.98
CDY63766 Canola golgi, plasma membrane 25.67 45.45
CDX78697 Canola plasma membrane 33.27 44.42
CDY66594 Canola plasma membrane 33.46 39.2
CDX85566 Canola cytosol 2.85 5.43
Protein Annotations
MapMan:11.2.4.1.1MapMan:24.2.5.2.1GO:A0A078D1G1InterPro:Auxin_eff_plantEnsemblPlants:CDX82059ProteinID:CDX82059
ProteinID:CDX82059.1GO:GO:0005575GO:GO:0006810GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0009719GO:GO:0009734GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00137077001InterPro:Mem_transPFAM:PF03547PANTHER:PTHR31752PANTHER:PTHR31752:SF14TIGRFAMs:TIGR00946
TMHMM:TMhelixUniParc:UPI0004EE4D1E::::
Description
BnaC02g22310D
Coordinates
chrLK031827:-:338523..341522
Molecular Weight (calculated)
57937.6 Da
IEP (calculated)
8.755
GRAVY (calculated)
0.238
Length
526 amino acids
Sequence
(BLAST)
001: MITATDFYHV MTAMVPLYVA MILAYGSVKW WKIFTPTQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSPNGSLDW
101: TITLFSLTTL PNTLVMGIPL LKGMYGDFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMAAGTAAK GNDGNGRDLH MFVWSSSASP VSDVFGGGGN
301: HHADYAAATN DHHKDGNSND NQYVEREEFS FGNKDDDSKV LAADNNISNK AQQQQPKVMP PTSVMTRLIL IMVWRKLIRN PNSYSSLFGI TWSLISFKWN
401: IEMPAIIAKS ISILSDAGLG MAMFSLGLFM ALNPRIIACG NRRAAFAAGM RFLAGPAVMT VASYAVGLRG VLLRVAIIQA ALPQGIVPFV FAKEYNVHPD
501: ILSTAVIFGM LIALPITLLY YILLGL
Best Arabidopsis Sequence Match ( AT1G23080.1 )
(BLAST)
001: MITWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS SNNPYAMNLR FIAADTLQKL IMLTLLIIWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEYRGAKIL IMEQFPETGA SIVSFKVESD VVSLDGHDFL ETDAQIGDDG
201: KLHVTVRKSN ASRRSFYGGG GTNMTPRPSN LTGAEIYSLN TTPRGSNFNH SDFYSMMGFP GGRLSNFGPA DMYSVQSSRG PTPRPSNFEE SCAMASSPRF
301: GYYPGGAPGS YPAPNPEFST GNKTGSKAPK ENHHHVGKSN SNDAKELHMF VWGSNGSPVS DRAGLQVDNG ANEQVGKSDQ GGAKEIRMLI SDHTQNGENK
401: AGPMNGDYGG EEESERVKEV PNGLHKLRCN STAELNPKEA IETGETVPVK HMPPASVMTR LILIMVWRKL IRNPNTYSSL IGLIWALVAF RWDVAMPKII
501: QQSISILSDA GLGMAMFSLG LFMALQPKLI ACGNSTATFA MAVRFFTGPA VMAVAAMAIG LRGDLLRVAI VQAALPQGIV PFVFAKEYNV HPAILSTGVI
601: FGMLIALPIT LVYYILLGL
Arabidopsis Description
PIN7Auxin efflux carrier component 7 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.